DNase-seq_ENCSR456KDF
DNase-seq ENCSR456KDF [biosample_summary="Homo sapiens left lung tissue female embryo (108 days)"]
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| Id: | DNase-seq/ENCSR456KDF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR456KDF [biosample_summary="Homo sapiens left lung tissue female embryo (108 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (108 days) output_type: peaks audit_internal_action: Archived analysis {ENCAN772WPG|/analyses/ENCAN772WPG/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF670GBC|/files/ENCFF670GBC/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 21432626 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF399YBZ|/files/ENCFF399YBZ/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 21321446 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR456KDF | float |
DNase-seq_ENCSR456KDF |
DNase-seq ENCSR456KDF [biosample_summary="Homo sapiens left lung tissue female embryo (108 days)"]
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[2, 818] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF484YOE.bed.gz | 985.88 KB | d66768463624c137208fced72154ac3c |
| ENCFF484YOE.bed.gz.dvc | 101.0 B | cfa1bf0d846b2e399e6d124439925b41 |
| ENCFF484YOE.tabix.bed.gz | 850.05 KB | 8cb319e80ad8374633887921dcee3ce5 |
| ENCFF484YOE.tabix.bed.gz.dvc | 106.0 B | a5c50ea2687449229f78fbbd20762d1b |
| ENCFF484YOE.tabix.bed.gz.tbi | 492.96 KB | b8cd312feedb1e60a7500f8b470ddecb |
| ENCFF484YOE.tabix.bed.gz.tbi.dvc | 110.0 B | f8fc9a556a3a3f0f0c8af550e3a68661 |
| genomic_resource.yaml | 2.59 KB | b78e410a65cb8ec610877ff41a796dbe |
| genomic_resource_original.yaml | 2.5 KB | c11f1241d93f88b31a50ecab813e56c1 |
| statistics/ |