Resource

Id DNase-seq/ENCSR455GUWcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR455GUW [biosample_summary="Homo sapiens Peyer''s patch tissue male adult (54 years)"]
Description
Labels
  • accession: ENCSR455GUW
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001211/
  • biosample_summary: Homo sapiens Peyer's patch tissue male adult (54 years)
  • date_created: 2019-07-29T20:41:32.495248+00:00
  • date_released: 2019-11-08
  • doi: 10.17989/ENCSR455GUW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (54 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR455GUW float

DNase-seq_ENCSR455GUW
DNase-seq ENCSR455GUW [biosample_summary="Homo sapiens Peyer''s patch tissue male adult (54 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR455GUW [0.0966, 24.8]
n
8,389,596
mean
2.73
sd
2.27

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 83895960.26% 47721
chr1 882700 0.35% 4986
chr2 587796 0.24% 3398
chr3 464277 0.23% 2685
chr4 311025 0.16% 1801
chr5 379367 0.21% 2200
chr6 467706 0.27% 2672
chr7 392637 0.25% 2235
chr8 303921 0.21% 1764
chr9 360029 0.26% 2047
chr10 369773 0.28% 2150
chr11 459171 0.34% 2607
chr12 404209 0.30% 2287
chr13 154827 0.14% 894
chr14 273376 0.26% 1554
chr15 276627 0.27% 1598
chr16 367270 0.41% 2065
chr17 502321 0.60% 2794
chr18 153541 0.19% 901
chr19 528701 0.90% 2818
chr20 232555 0.36% 1328
chr21 92319 0.20% 523
chr22 211279 0.42% 1193
chrX 205532 0.13% 1176
chrY 8637 0.02% 45
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 47721 2 640 175.81 180
global segment-length histogram

Files

Filename Size md5
ENCFF486OCF.bed.gz 527.07 KB abec661b92c010702e938a14d9269f4f
ENCFF486OCF.tabix.bed.gz 475.88 KB c26e7efec2dc3294c5d4e1694889047a
ENCFF486OCF.tabix.bed.gz.tbi 251.64 KB 4c239d592f3ad9e82ce41c3debf14969
genomic_resource.yaml 2.04 KB 982ac4e2139fbaf6ab8305cc4ec474e0
statistics/