DNase-seq_ENCSR455GUW
DNase-seq ENCSR455GUW [biosample_summary="Homo sapiens Peyer''s patch tissue male adult (54 years)"]
×
| Id: | DNase-seq/ENCSR455GUW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR455GUW [biosample_summary="Homo sapiens Peyer''s patch tissue male adult (54 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (54 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF226LGV|/files/ENCFF226LGV/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.34. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR455GUW | float |
DNase-seq_ENCSR455GUW |
DNase-seq ENCSR455GUW [biosample_summary="Homo sapiens Peyer''s patch tissue male adult (54 years)"]
|
|
[0.0966, 24.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF486OCF.bed.gz | 527.07 KB | abec661b92c010702e938a14d9269f4f |
| ENCFF486OCF.bed.gz.dvc | 100.0 B | b65f97dea1e4081a01df486029e4b050 |
| ENCFF486OCF.tabix.bed.gz | 475.88 KB | c26e7efec2dc3294c5d4e1694889047a |
| ENCFF486OCF.tabix.bed.gz.dvc | 106.0 B | bc1dea44c8a64f4dca3cd9c0bf693f6b |
| ENCFF486OCF.tabix.bed.gz.tbi | 251.64 KB | 4c239d592f3ad9e82ce41c3debf14969 |
| ENCFF486OCF.tabix.bed.gz.tbi.dvc | 110.0 B | 94a759fb19999fb74ddfaf3a0459e505 |
| genomic_resource.yaml | 2.04 KB | 982ac4e2139fbaf6ab8305cc4ec474e0 |
| genomic_resource_original.yaml | 1.94 KB | eeffaae9add0d502954bca6442ec2a07 |
| statistics/ |