| Id: | DNase-seq/ENCSR452RAX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR452RAX [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (37 years) treated with 100 ng/mL Interleukin-6 for 8 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (37 years) treated with 100 ng/mL Interleukin-6 for 8 hours output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF021GFS|/files/ENCFF021GFS/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.39. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR452RAX | float |
DNase-seq_ENCSR452RAX |
DNase-seq ENCSR452RAX [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (37 years) treated with 100 ng/mL Interleukin-6 for 8 hours"]
|
 |
[0.0409, 53] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF652TDB.bed.gz | 752.44 KB | 82c898607f3631fde9ecb51aec3382ce |
| ENCFF652TDB.bed.gz.dvc | 100.0 B | f50436c43df6812e1eb1e64f5108b517 |
| ENCFF652TDB.tabix.bed.gz | 686.12 KB | 446fc5b0c178d0c853850ced8beed23b |
| ENCFF652TDB.tabix.bed.gz.dvc | 106.0 B | 46adab8aa72db58b7b9410c422ba54cb |
| ENCFF652TDB.tabix.bed.gz.tbi | 277.99 KB | 226949d14a6cca27a3cb06917403de8e |
| ENCFF652TDB.tabix.bed.gz.tbi.dvc | 110.0 B | e033cbb7a4a3110ef5253cb2e60653b8 |
| genomic_resource.yaml | 2.33 KB | 8eb7b9da19e5a84211faf802ff3e15e7 |
| genomic_resource_original.yaml | 2.17 KB | 864c5f236e92894700a3a10905368c75 |
| statistics/ |