DNase-seq_ENCSR452EGE
DNase-seq ENCSR452EGE [biosample_summary="Homo sapiens muscle of arm tissue male embryo (120 days)"]
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| Id: | DNase-seq/ENCSR452EGE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR452EGE [biosample_summary="Homo sapiens muscle of arm tissue male embryo (120 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male embryo (120 days) output_type: peaks audit_warning: Alignment file {ENCFF247QVO|/files/ENCFF247QVO/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 41136410 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF247QVO|/files/ENCFF247QVO/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.38. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR452EGE | float |
DNase-seq_ENCSR452EGE |
DNase-seq ENCSR452EGE [biosample_summary="Homo sapiens muscle of arm tissue male embryo (120 days)"]
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[0.195, 22.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF006YTP.bed.gz | 678.2 KB | 6efd6c3d3719849051d7bd9085a5ec34 |
| ENCFF006YTP.bed.gz.dvc | 100.0 B | b07ef676c7fa42f854d1a4830cd2ffee |
| ENCFF006YTP.tabix.bed.gz | 609.01 KB | 11338cca8d52f1aa6e8e5dfae2fdff3a |
| ENCFF006YTP.tabix.bed.gz.dvc | 106.0 B | 3442424a3864fb6e9df009c91e8741e3 |
| ENCFF006YTP.tabix.bed.gz.tbi | 336.93 KB | 6bda24bf57311a2f777ac60d29781c90 |
| ENCFF006YTP.tabix.bed.gz.tbi.dvc | 110.0 B | f8e13a54fa793a78d4b1fedbd86a5c43 |
| genomic_resource.yaml | 2.66 KB | 6d61b34388d03e04a79c4a03318c86fe |
| genomic_resource_original.yaml | 2.56 KB | 559f518097351f945bedfca223f952f3 |
| statistics/ |