DNase-seq_ENCSR450PWF
DNase-seq ENCSR450PWF [biosample_summary="Homo sapiens thyroid gland tissue female adult (51 years)"]
×
| Id: | DNase-seq/ENCSR450PWF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR450PWF [biosample_summary="Homo sapiens thyroid gland tissue female adult (51 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (51 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF657ZLL|/files/ENCFF657ZLL/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.37. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR450PWF | float |
DNase-seq_ENCSR450PWF |
DNase-seq ENCSR450PWF [biosample_summary="Homo sapiens thyroid gland tissue female adult (51 years)"]
|
|
[0.0403, 14.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF336FSX.bed.gz | 1.52 MB | 463ea434f0b6d8e3f9cdc66391675275 |
| ENCFF336FSX.bed.gz.dvc | 101.0 B | 1cbc421ca46b572e805f9303a2735b61 |
| ENCFF336FSX.tabix.bed.gz | 1.39 MB | b4dcd839498ad64b8ccaed64cedc7712 |
| ENCFF336FSX.tabix.bed.gz.dvc | 107.0 B | a3748c951415a8343bce0d755d847a51 |
| ENCFF336FSX.tabix.bed.gz.tbi | 510.66 KB | 07d5931ce0019d65c281718db686beb8 |
| ENCFF336FSX.tabix.bed.gz.tbi.dvc | 110.0 B | 5b08b68c1af2bb518f1e4f146b951374 |
| genomic_resource.yaml | 2.05 KB | ccfc381956302458dc29915bd3aa2b52 |
| genomic_resource_original.yaml | 1.94 KB | 079a9d0ff15101a4e0d71da9d428fc7f |
| statistics/ |