Resource

Id DNase-seq/ENCSR450PWFcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR450PWF [biosample_summary="Homo sapiens thyroid gland tissue female adult (51 years)"]
Description
Labels
  • accession: ENCSR450PWF
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002046/
  • biosample_summary: Homo sapiens thyroid gland tissue female adult (51 years)
  • date_created: 2019-07-29T20:41:32.437732+00:00
  • date_released: 2019-11-08
  • doi: 10.17989/ENCSR450PWF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (51 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR450PWF float

DNase-seq_ENCSR450PWF
DNase-seq ENCSR450PWF [biosample_summary="Homo sapiens thyroid gland tissue female adult (51 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR450PWF [0.0403, 14.4]
n
26,875,946
mean
1.42
sd
1.27

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 268759460.84% 142439
chr1 2459694 0.99% 13027
chr2 2156741 0.89% 11516
chr3 1847469 0.93% 9795
chr4 1364448 0.72% 7273
chr5 1468815 0.81% 7795
chr6 1661840 0.97% 8826
chr7 1322659 0.83% 7060
chr8 1282423 0.88% 6843
chr9 1201528 0.87% 6352
chr10 1333480 1.00% 7034
chr11 1366825 1.01% 7237
chr12 1318796 0.99% 6990
chr13 697237 0.61% 3694
chr14 903902 0.84% 4750
chr15 903038 0.89% 4785
chr16 878126 0.97% 4561
chr17 1081917 1.30% 5725
chr18 629788 0.78% 3334
chr19 817396 1.39% 4201
chr20 700080 1.09% 3696
chr21 289155 0.62% 1517
chr22 478638 0.94% 2552
chrX 711210 0.46% 3870
chrY 741 <0.01% 6
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 142439 2 780 188.68 180
global segment-length histogram

Files

Filename Size md5
ENCFF336FSX.bed.gz 1.52 MB 463ea434f0b6d8e3f9cdc66391675275
ENCFF336FSX.tabix.bed.gz 1.39 MB b4dcd839498ad64b8ccaed64cedc7712
ENCFF336FSX.tabix.bed.gz.tbi 510.66 KB 07d5931ce0019d65c281718db686beb8
genomic_resource.yaml 2.05 KB ccfc381956302458dc29915bd3aa2b52
statistics/