Resource

Id DNase-seq/ENCSR449HOQcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR449HOQ [biosample_summary="Homo sapiens right hindlimb tissue male embryo (81 days)"]
Description
Labels
  • accession: ENCSR449HOQ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_8300003/
  • biosample_summary: Homo sapiens right hindlimb tissue male embryo (81 days)
  • date_created: 2017-11-01T21:26:56.923981+00:00
  • date_released: 2018-01-29
  • doi: 10.17989/ENCSR449HOQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (81 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR449HOQ float

DNase-seq_ENCSR449HOQ
DNase-seq ENCSR449HOQ [biosample_summary="Homo sapiens right hindlimb tissue male embryo (81 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR449HOQ [5, 1.42e+04]
n
36,723,752
mean
255
sd
529

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 367237521.14% 244387
chr1 3200844 1.29% 21300
chr2 3040012 1.26% 20231
chr3 2168023 1.09% 14419
chr4 1668957 0.88% 11098
chr5 1928333 1.06% 12828
chr6 1941539 1.14% 12929
chr7 1827655 1.15% 12162
chr8 1736724 1.20% 11559
chr9 1727627 1.25% 11498
chr10 1902685 1.42% 12664
chr11 1979078 1.47% 13174
chr12 1602564 1.20% 10671
chr13 913544 0.80% 6080
chr14 1255205 1.17% 8349
chr15 1226456 1.20% 8165
chr16 1288158 1.43% 8574
chr17 1730133 2.08% 11529
chr18 811644 1.01% 5395
chr19 1241050 2.12% 8261
chr20 1131853 1.76% 7529
chr21 496496 1.06% 3305
chr22 822556 1.62% 5468
chrX 1031024 0.66% 6855
chrY 51592 0.09% 344
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 244387 5 450 150.27 150
global segment-length histogram

Files

Filename Size md5
ENCFF860VMW.bed.gz 2.34 MB a62ebcfa3737506c4c08dba8d19edb84
ENCFF860VMW.tabix.bed.gz 2.01 MB dca2e1b7a81b801446a875683a19ab8f
ENCFF860VMW.tabix.bed.gz.tbi 652.32 KB 955af39cf86ba39ffb7802c9a1880ae9
genomic_resource.yaml 1.4 KB 0649895d5b2280d9383dbaf38381a342
statistics/