DNase-seq_ENCSR444VTC
DNase-seq ENCSR444VTC [biosample_summary="Homo sapiens large intestine tissue female embryo (105 days)"]
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| Id: | DNase-seq/ENCSR444VTC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR444VTC [biosample_summary="Homo sapiens large intestine tissue female embryo (105 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (105 days) output_type: peaks audit_warning: Alignment file {ENCFF762TQR|/files/ENCFF762TQR/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 26444729 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR444VTC | float |
DNase-seq_ENCSR444VTC |
DNase-seq ENCSR444VTC [biosample_summary="Homo sapiens large intestine tissue female embryo (105 days)"]
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[0.303, 21.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF665SPS.bed.gz | 463.77 KB | 04adddc5e3e99698383d2d6da3a71dcf |
| ENCFF665SPS.bed.gz.dvc | 100.0 B | 3ed05e8dc1f644fcbb72f5490b54b6e2 |
| ENCFF665SPS.tabix.bed.gz | 410.44 KB | c0c41c1b309e8dd1c93dbeb0c016420a |
| ENCFF665SPS.tabix.bed.gz.dvc | 106.0 B | 8a2fe219d41db6329f6344b3cf7ced4d |
| ENCFF665SPS.tabix.bed.gz.tbi | 255.71 KB | 7b454478638af0fa353900f88041ea92 |
| ENCFF665SPS.tabix.bed.gz.tbi.dvc | 110.0 B | 0ca396a29c2d2276df2990b31643ed73 |
| genomic_resource.yaml | 1.85 KB | 9ae545594590f8d758179500fb48e6cb |
| genomic_resource_original.yaml | 1.75 KB | 0b5a3d7abe0309746f2f57898878384a |
| statistics/ |