Resource

Id DNase-seq/ENCSR444VTCcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR444VTC [biosample_summary="Homo sapiens large intestine tissue female embryo (105 days)"]
Description
Labels
  • accession: ENCSR444VTC
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000059/
  • biosample_summary: Homo sapiens large intestine tissue female embryo (105 days)
  • date_created: 2015-09-16T21:42:19.821545+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR444VTC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (105 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR444VTC float

DNase-seq_ENCSR444VTC

DNase-seq ENCSR444VTC [biosample_summary="Homo sapiens large intestine tissue female embryo (105 days)"]
HISTOGRAM FOR DNase-seq_ENCSR444VTC [0.303, 21.8]
n
7,843,479
mean
3.47
sd
3.31

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 78434790.24% 43369
chr1 739847 0.30% 4061
chr2 607376 0.25% 3467
chr3 498872 0.25% 2805
chr4 374107 0.20% 2116
chr5 396704 0.22% 2199
chr6 467370 0.27% 2590
chr7 382698 0.24% 2114
chr8 346703 0.24% 1946
chr9 330866 0.24% 1842
chr10 353318 0.26% 1973
chr11 409559 0.30% 2274
chr12 402077 0.30% 2236
chr13 190667 0.17% 1055
chr14 256045 0.24% 1402
chr15 249768 0.24% 1385
chr16 278118 0.31% 1538
chr17 353949 0.43% 1893
chr18 167963 0.21% 927
chr19 400951 0.68% 1998
chr20 197993 0.31% 1119
chr21 88330 0.19% 482
chr22 142042 0.28% 799
chrX 207932 0.13% 1146
chrY 224 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 43369 2 680 180.85 180
global segment-length histogram

Files

Filename Size md5
ENCFF665SPS.bed.gz 463.77 KB 04adddc5e3e99698383d2d6da3a71dcf
ENCFF665SPS.tabix.bed.gz 410.44 KB c0c41c1b309e8dd1c93dbeb0c016420a
ENCFF665SPS.tabix.bed.gz.tbi 255.71 KB 7b454478638af0fa353900f88041ea92
genomic_resource.yaml 1.85 KB 9ae545594590f8d758179500fb48e6cb
statistics/