DNase-seq_ENCSR442GKD
DNase-seq ENCSR442GKD [biosample_summary="Homo sapiens T-cell male adult (34 years)"]
×
| Id: | DNase-seq/ENCSR442GKD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR442GKD [biosample_summary="Homo sapiens T-cell male adult (34 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (34 years) output_type: peaks audit_warning: Alignment file {ENCFF127DTN|/files/ENCFF127DTN/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 49623408 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR442GKD | float |
DNase-seq_ENCSR442GKD |
DNase-seq ENCSR442GKD [biosample_summary="Homo sapiens T-cell male adult (34 years)"]
|
|
[0.202, 55.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF271IQS.bed.gz | 452.64 KB | 397ddb1c914ee1a16287ffcb73758563 |
| ENCFF271IQS.bed.gz.dvc | 100.0 B | 846a7f91844122616d045ec5d96d6491 |
| ENCFF271IQS.tabix.bed.gz | 410.02 KB | b98b905d99087da18378d323b80368bd |
| ENCFF271IQS.tabix.bed.gz.dvc | 106.0 B | 58b8c1a5e2320e642fbcdcea4d296707 |
| ENCFF271IQS.tabix.bed.gz.tbi | 202.7 KB | 5cbb9e14d182fa7166f8079ed4857a11 |
| ENCFF271IQS.tabix.bed.gz.tbi.dvc | 110.0 B | 5627428a6a5daaf38199681cf319c210 |
| genomic_resource.yaml | 1.79 KB | dde19158d9b0f68fd9edfad833100343 |
| genomic_resource_original.yaml | 1.7 KB | c7b8e83614d6529e39ed7eb8bbb4936e |
| statistics/ |