Resource

Id DNase-seq/ENCSR442GKDcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR442GKD [biosample_summary="Homo sapiens T-cell male adult (34 years)"]
Description
Labels
  • accession: ENCSR442GKD
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell male adult (34 years)
  • date_created: 2020-04-12T19:00:07.904623+00:00
  • date_released: 2020-09-25
  • doi: 10.17989/ENCSR442GKD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (34 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR442GKD float

DNase-seq_ENCSR442GKD
DNase-seq ENCSR442GKD [biosample_summary="Homo sapiens T-cell male adult (34 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR442GKD [0.202, 55.5]
n
7,235,918
mean
5.99
sd
6.56

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 72359180.22% 40786
chr1 720399 0.29% 4073
chr2 496906 0.21% 2822
chr3 388024 0.20% 2161
chr4 244776 0.13% 1377
chr5 320145 0.18% 1793
chr6 415211 0.24% 2351
chr7 330389 0.21% 1864
chr8 264982 0.18% 1510
chr9 283333 0.20% 1600
chr10 316060 0.24% 1790
chr11 371525 0.28% 2104
chr12 368255 0.28% 2079
chr13 142271 0.12% 805
chr14 261511 0.24% 1462
chr15 225639 0.22% 1288
chr16 306161 0.34% 1725
chr17 460801 0.55% 2594
chr18 112180 0.14% 639
chr19 511344 0.87% 2792
chr20 204538 0.32% 1177
chr21 88581 0.19% 494
chr22 179986 0.35% 1018
chrX 214893 0.14% 1224
chrY 8008 0.01% 44
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 40786 20 720 177.41 180
global segment-length histogram

Files

Filename Size md5
ENCFF271IQS.bed.gz 452.64 KB 397ddb1c914ee1a16287ffcb73758563
ENCFF271IQS.tabix.bed.gz 410.02 KB b98b905d99087da18378d323b80368bd
ENCFF271IQS.tabix.bed.gz.tbi 202.7 KB 5cbb9e14d182fa7166f8079ed4857a11
genomic_resource.yaml 1.79 KB dde19158d9b0f68fd9edfad833100343
statistics/