Resource
| Id | DNase-seq/ENCSR441OGH |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR441OGH [biosample_summary="Homo sapiens left lung tissue male embryo (87 days)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male embryo (87 days) output_type: peaks audit_warning: Alignment file {ENCFF383TDA|/files/ENCFF383TDA/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 49572190 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR441OGH | float |
DNase-seq_ENCSR441OGH |
DNase-seq ENCSR441OGH [biosample_summary="Homo sapiens left lung tissue male embryo (87 days)"]
|
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[0.101, 69.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 19259571 | 0.60% | 102666 |
| chr1 | 1673732 | 0.67% | 8892 |
| chr2 | 1602305 | 0.66% | 8562 |
| chr3 | 1309155 | 0.66% | 7019 |
| chr4 | 1051133 | 0.55% | 5603 |
| chr5 | 1132034 | 0.62% | 6048 |
| chr6 | 1188235 | 0.70% | 6286 |
| chr7 | 997288 | 0.63% | 5363 |
| chr8 | 907755 | 0.63% | 4858 |
| chr9 | 800986 | 0.58% | 4261 |
| chr10 | 952984 | 0.71% | 5059 |
| chr11 | 963378 | 0.71% | 5135 |
| chr12 | 932828 | 0.70% | 4952 |
| chr13 | 571035 | 0.50% | 3045 |
| chr14 | 602338 | 0.56% | 3220 |
| chr15 | 620776 | 0.61% | 3315 |
| chr16 | 578500 | 0.64% | 3110 |
| chr17 | 739219 | 0.89% | 3955 |
| chr18 | 466852 | 0.58% | 2503 |
| chr19 | 610605 | 1.04% | 3093 |
| chr20 | 489951 | 0.76% | 2623 |
| chr21 | 215099 | 0.46% | 1156 |
| chr22 | 297572 | 0.59% | 1589 |
| chrX | 531332 | 0.34% | 2890 |
| chrY | 24479 | 0.04% | 129 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 102666 | 4 | 880 | 187.59 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF876RDL.bed.gz | 1.09 MB | 9a5ab9847ddeaabc2a2f79c1080024fe |
| ENCFF876RDL.tabix.bed.gz | 1000.37 KB | 37ddb139940be69aac70181952f1f245 |
| ENCFF876RDL.tabix.bed.gz.tbi | 481.1 KB | b71ce7a2a6d25fd00b596dfda90e1bbd |
| genomic_resource.yaml | 1.82 KB | faf6a48c0efc8d54b39665dbeb813c74 |
| statistics/ |
