Resource

Id DNase-seq/ENCSR441OGHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR441OGH [biosample_summary="Homo sapiens left lung tissue male embryo (87 days)"]
Description
Labels
  • accession: ENCSR441OGH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002168/
  • biosample_summary: Homo sapiens left lung tissue male embryo (87 days)
  • date_created: 2015-09-16T21:42:55.218123+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR441OGH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (87 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR441OGH float

DNase-seq_ENCSR441OGH

DNase-seq ENCSR441OGH [biosample_summary="Homo sapiens left lung tissue male embryo (87 days)"]
HISTOGRAM FOR DNase-seq_ENCSR441OGH [0.101, 69.8]
n
19,259,571
mean
3.71
sd
5.43

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 192595710.60% 102666
chr1 1673732 0.67% 8892
chr2 1602305 0.66% 8562
chr3 1309155 0.66% 7019
chr4 1051133 0.55% 5603
chr5 1132034 0.62% 6048
chr6 1188235 0.70% 6286
chr7 997288 0.63% 5363
chr8 907755 0.63% 4858
chr9 800986 0.58% 4261
chr10 952984 0.71% 5059
chr11 963378 0.71% 5135
chr12 932828 0.70% 4952
chr13 571035 0.50% 3045
chr14 602338 0.56% 3220
chr15 620776 0.61% 3315
chr16 578500 0.64% 3110
chr17 739219 0.89% 3955
chr18 466852 0.58% 2503
chr19 610605 1.04% 3093
chr20 489951 0.76% 2623
chr21 215099 0.46% 1156
chr22 297572 0.59% 1589
chrX 531332 0.34% 2890
chrY 24479 0.04% 129
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 102666 4 880 187.59 180
global segment-length histogram

Files

Filename Size md5
ENCFF876RDL.bed.gz 1.09 MB 9a5ab9847ddeaabc2a2f79c1080024fe
ENCFF876RDL.tabix.bed.gz 1000.37 KB 37ddb139940be69aac70181952f1f245
ENCFF876RDL.tabix.bed.gz.tbi 481.1 KB b71ce7a2a6d25fd00b596dfda90e1bbd
genomic_resource.yaml 1.82 KB faf6a48c0efc8d54b39665dbeb813c74
statistics/