Resource

Id DNase-seq/ENCSR441MMOcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR441MMO [biosample_summary="Homo sapiens right lung tissue female embryo (110 days)"]
Description
Labels
  • accession: ENCSR441MMO
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002167/
  • biosample_summary: Homo sapiens right lung tissue female embryo (110 days)
  • date_created: 2015-09-16T21:42:53.005456+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR441MMO
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (110 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR441MMO float

DNase-seq_ENCSR441MMO
DNase-seq ENCSR441MMO [biosample_summary="Homo sapiens right lung tissue female embryo (110 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR441MMO [3, 2.22e+03]
n
12,827,615
mean
44.6
sd
40.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 128276150.40% 85054
chr1 1107350 0.44% 7334
chr2 1045120 0.43% 6923
chr3 880785 0.44% 5838
chr4 712075 0.37% 4720
chr5 777750 0.43% 5155
chr6 800172 0.47% 5314
chr7 676675 0.42% 4477
chr8 614337 0.42% 4069
chr9 545437 0.39% 3619
chr10 637783 0.48% 4232
chr11 630728 0.47% 4184
chr12 629058 0.47% 4170
chr13 392912 0.34% 2607
chr14 400124 0.37% 2653
chr15 422177 0.41% 2803
chr16 362409 0.40% 2408
chr17 481985 0.58% 3208
chr18 311340 0.39% 2062
chr19 387193 0.66% 2573
chr20 304853 0.47% 2022
chr21 149321 0.32% 990
chr22 190668 0.38% 1267
chrX 366613 0.23% 2421
chrY 750 <0.01% 5
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 85054 7 521 150.82 150
global segment-length histogram

Files

Filename Size md5
ENCFF857LHK.bed.gz 817.67 KB 17adeade7c164f89da653bc1a1019792
ENCFF857LHK.tabix.bed.gz 702.01 KB f8b27bf97e353f85b28ae28f90de778b
ENCFF857LHK.tabix.bed.gz.tbi 393.63 KB 71306ab4ecf24780bbf7437f31e541de
genomic_resource.yaml 1.4 KB 2fdc9c029d7341c4b39d7e1c6d431a8d
statistics/