| Id: | DNase-seq/ENCSR438USP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR438USP [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL TNF-alpha for 48 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL TNF-alpha for 48 hours output_type: peaks audit_warning: Alignment file {ENCFF012ZOX|/files/ENCFF012ZOX/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 22405778 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR438USP | float |
DNase-seq_ENCSR438USP |
DNase-seq ENCSR438USP [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL TNF-alpha for 48 hours"]
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[0.447, 34.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF169VKR.bed.gz | 401.05 KB | 1e0ee06afe2339f8d9ea03405062c4e2 |
| ENCFF169VKR.bed.gz.dvc | 100.0 B | b8dd3e8cef2b9bee25494ef5688bb5ac |
| ENCFF169VKR.tabix.bed.gz | 359.49 KB | 9a9670cc05aabdfe08d179079dcd1188 |
| ENCFF169VKR.tabix.bed.gz.dvc | 106.0 B | 9f9cc4e73577d92b80c2ba03c0325467 |
| ENCFF169VKR.tabix.bed.gz.tbi | 209.66 KB | 892cfb6dedd38572a85b5f907b38b085 |
| ENCFF169VKR.tabix.bed.gz.tbi.dvc | 110.0 B | 4512e31e68cfab788549fd08755dcbe2 |
| genomic_resource.yaml | 2.42 KB | 95fa241e9e71e329a76c36d4dc58a5b0 |
| genomic_resource_original.yaml | 2.2 KB | 29d94928e3b296694160c3a6fabfd060 |
| statistics/ |