Resource

Id DNase-seq/ENCSR438LZGcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR438LZG [biosample_summary="Homo sapiens stimulated activated naive\ \ B cell female adult (39 years) treated with 10 \u03BCg/mL anti-IgM for 72 hours,\ \ 1 \u03BCg/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours"]
Description
Labels
  • accession: ENCSR438LZG
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000661/
  • biosample_summary: Homo sapiens stimulated activated naive B cell female adult (39 years) treated with 10 μg/mL anti-IgM for 72 hours, 1 μg/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours
  • date_created: 2021-08-23T23:11:18.397379+00:00
  • date_released: 2021-09-02
  • doi: 10.17989/ENCSR438LZG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (39 years) treated with 10 μg/mL anti-IgM for 72 hours, 1 μg/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR438LZG float

DNase-seq_ENCSR438LZG
DNase-seq ENCSR438LZG [biosample_summary="Homo sapiens stimulated activated naive\ \ B cell female adult (39 years) treated with 10 \u03BCg/mL anti-IgM for 72 hours,\ \ 1 \u03BCg/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR438LZG [0.0807, 26.7]
n
13,167,432
mean
3
sd
3.3

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 131674320.41% 61903
chr1 1289951 0.52% 5988
chr2 928916 0.38% 4426
chr3 763578 0.39% 3581
chr4 475652 0.25% 2276
chr5 622767 0.34% 2955
chr6 815438 0.48% 3802
chr7 629574 0.40% 2997
chr8 525378 0.36% 2505
chr9 547776 0.40% 2574
chr10 591828 0.44% 2819
chr11 656250 0.49% 3109
chr12 671868 0.50% 3154
chr13 261098 0.23% 1253
chr14 437894 0.41% 2044
chr15 427038 0.42% 2038
chr16 542695 0.60% 2513
chr17 752328 0.90% 3463
chr18 237380 0.30% 1125
chr19 763978 1.30% 3429
chr20 369823 0.57% 1788
chr21 151766 0.32% 716
chr22 316986 0.62% 1491
chrX 387260 0.25% 1855
chrY 210 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 61903 2 940 212.71 205
global segment-length histogram

Files

Filename Size md5
ENCFF321KEW.bed.gz 680.84 KB 530477788b070adbc28579d018bf1ecc
ENCFF321KEW.tabix.bed.gz 621.93 KB ce27799088e141e6e411ba1b4d14b809
ENCFF321KEW.tabix.bed.gz.tbi 282.27 KB b260c5ca790b38ad7f7bc56fa8082382
genomic_resource.yaml 1.94 KB 15817de67c02908b3e8a302bf91e749a
statistics/