DNase-seq_ENCSR437AYW
DNase-seq ENCSR437AYW [biosample_summary="Homo sapiens vagina tissue female adult (53 years)"]
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| Id: | DNase-seq/ENCSR437AYW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR437AYW [biosample_summary="Homo sapiens vagina tissue female adult (53 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (53 years) output_type: peaks audit_internal_action: Archived analysis {ENCAN845FHY|/analyses/ENCAN845FHY/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF244BRN|/files/ENCFF244BRN/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.26. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR437AYW | float |
DNase-seq_ENCSR437AYW |
DNase-seq ENCSR437AYW [biosample_summary="Homo sapiens vagina tissue female adult (53 years)"]
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[2, 7.15e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF018IDK.bed.gz | 1.97 MB | 0421211e0792f8c31682186ddf568448 |
| ENCFF018IDK.bed.gz.dvc | 101.0 B | 6d5af9f154e36dfb3dc0dac3027d36f2 |
| ENCFF018IDK.tabix.bed.gz | 1.69 MB | 9fa83e2dcf2d33ac8e5e6c5ab8e8e114 |
| ENCFF018IDK.tabix.bed.gz.dvc | 107.0 B | ad78247ece3e566a6de2b5717045bcd0 |
| ENCFF018IDK.tabix.bed.gz.tbi | 330.43 KB | bc3757a6528f499cc30e089c71d44abe |
| ENCFF018IDK.tabix.bed.gz.tbi.dvc | 110.0 B | cd1b9d9a37f6927b62201e19fa331995 |
| genomic_resource.yaml | 2.19 KB | 852f09c5713539a2daf17a6f77032ace |
| genomic_resource_original.yaml | 2.09 KB | 54005f589a2bc570e293b672f943844f |
| statistics/ |