Resource

Id DNase-seq/ENCSR436JREcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR436JRE [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (20 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days"]
Description
Labels
  • accession: ENCSR436JRE
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000896/
  • biosample_summary: Homo sapiens activated CD4-positive, alpha-beta T cell male adult (20 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days
  • date_created: 2019-08-24T00:09:40.719622+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR436JRE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (20 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR436JRE float

DNase-seq_ENCSR436JRE
DNase-seq ENCSR436JRE [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (20 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days"]
 HISTOGRAM FOR DNase-seq_ENCSR436JRE [0.036, 47]
n
16,250,483
mean
3.43
sd
5.07

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 162504830.51% 85846
chr1 1613265 0.65% 8453
chr2 1211419 0.50% 6446
chr3 912411 0.46% 4857
chr4 590603 0.31% 3149
chr5 757548 0.42% 4029
chr6 928838 0.54% 4856
chr7 748676 0.47% 4037
chr8 630621 0.43% 3345
chr9 684727 0.49% 3655
chr10 745911 0.56% 4000
chr11 824216 0.61% 4362
chr12 797654 0.60% 4212
chr13 334916 0.29% 1768
chr14 566340 0.53% 2993
chr15 569434 0.56% 3042
chr16 643293 0.71% 3343
chr17 923619 1.11% 4803
chr18 281511 0.35% 1507
chr19 896393 1.53% 4544
chr20 480268 0.75% 2583
chr21 201494 0.43% 1060
chr22 372933 0.73% 1972
chrX 512942 0.33% 2709
chrY 21451 0.04% 121
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 85846 2 780 189.3 180
global segment-length histogram

Files

Filename Size md5
ENCFF765OGD.bed.gz 967.99 KB c9b38a86956088148a0134092d77c436
ENCFF765OGD.tabix.bed.gz 885.57 KB 7d59d87f71f2a55e6aff06582ed8d7c9
ENCFF765OGD.tabix.bed.gz.tbi 328.88 KB 15cf0b0f8997e2526af89d240c499966
genomic_resource.yaml 1.77 KB abd2e85d01721d81aca291214dd5c6b7
statistics/