DNase-seq_ENCSR435NHO
DNase-seq ENCSR435NHO [biosample_summary="Homo sapiens embryonic facial prominence tissue embryo (53 days) and embryo (58 days)"]
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| Id: | DNase-seq/ENCSR435NHO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR435NHO [biosample_summary="Homo sapiens embryonic facial prominence tissue embryo (53 days) and embryo (58 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: embryo (53 days) embryo (58 days) output_type: peaks audit_error: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF967NGX|/files/ENCFF967NGX/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.18. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_error: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF603DLI|/files/ENCFF603DLI/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.25. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_internal_action: Archived analysis {ENCAN301NSI|/analyses/ENCAN301NSI/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR435NHO | float |
DNase-seq_ENCSR435NHO |
DNase-seq ENCSR435NHO [biosample_summary="Homo sapiens embryonic facial prominence tissue embryo (53 days) and embryo (58 days)"]
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[7, 3.5e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF440BEP.bed.gz | 982.59 KB | 23ad093aabb0934a0d1b267ad6ca7e75 |
| ENCFF440BEP.bed.gz.dvc | 101.0 B | 6efd2f7d840625e97a2bfff5c6f75ea3 |
| ENCFF440BEP.tabix.bed.gz | 839.54 KB | e865c6ed65f90642ee823481618eedb7 |
| ENCFF440BEP.tabix.bed.gz.dvc | 106.0 B | f169ab804177422cf40cb025b776206f |
| ENCFF440BEP.tabix.bed.gz.tbi | 439.25 KB | 0bf4124f3bb309cb9130b90963065ab3 |
| ENCFF440BEP.tabix.bed.gz.tbi.dvc | 110.0 B | 1b31c0c83abde6afe7b722e738a65446 |
| genomic_resource.yaml | 3.11 KB | c8f5e87c275589e24d2481705ebba712 |
| genomic_resource_original.yaml | 2.98 KB | 4fae247973eaa8e942aa5dcc2b22e370 |
| statistics/ |