| Id: | DNase-seq/ENCSR433WOV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR433WOV [biosample_summary="Homo sapiens activated T-helper 9 cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours output_type: peaks audit_warning: Alignment file {ENCFF089LIB|/files/ENCFF089LIB/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 47403370 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR433WOV | float |
DNase-seq_ENCSR433WOV |
DNase-seq ENCSR433WOV [biosample_summary="Homo sapiens activated T-helper 9 cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours"]
|
 |
[0.254, 58.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF608HAY.bed.gz | 482.87 KB | 2ed2f55cf41f3eb8a17be92a4f3516d6 |
| ENCFF608HAY.bed.gz.dvc | 100.0 B | 0b48fb274e14ccba74a8ed5b58ca4787 |
| ENCFF608HAY.tabix.bed.gz | 438.35 KB | cefe4e2f3f391056859baaac02f50b17 |
| ENCFF608HAY.tabix.bed.gz.dvc | 106.0 B | 4b3b03a285b1d155b697ea715e193661 |
| ENCFF608HAY.tabix.bed.gz.tbi | 207.14 KB | 41395bf48b9745cafe68e6bf071aacd0 |
| ENCFF608HAY.tabix.bed.gz.tbi.dvc | 110.0 B | 0bd82408f480f3e96d7d09abd956bdbd |
| genomic_resource.yaml | 2.36 KB | 8139c8ebd62a71ad5d7df2c174bcda54 |
| genomic_resource_original.yaml | 2.16 KB | 58600b5cd1f3bb388431f94fd6925914 |
| statistics/ |