Resource

Id DNase-seq/ENCSR433NEXcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR433NEX [biosample_summary="Homo sapiens with mild cognitive impairment; posterior cingulate gyrus tissue female adult (90 or above years)"]
Description
Labels
  • accession: ENCSR433NEX
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002740/
  • biosample_summary: Homo sapiens with mild cognitive impairment; posterior cingulate gyrus tissue female adult (90 or above years)
  • date_created: 2021-08-23T17:03:31.008259+00:00
  • date_released: 2021-08-31
  • doi: 10.17989/ENCSR433NEX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (90 or above years) with mild cognitive impairment
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR433NEX float

DNase-seq_ENCSR433NEX
DNase-seq ENCSR433NEX [biosample_summary="Homo sapiens with mild cognitive impairment; posterior cingulate gyrus tissue female adult (90 or above years)"]
 HISTOGRAM FOR DNase-seq_ENCSR433NEX [0.0382, 16.9]
n
54,381,048
mean
0.639
sd
1.02

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 543810481.69% 294208
chr1 4687166 1.88% 25325
chr2 3792954 1.57% 20767
chr3 2447944 1.23% 13686
chr4 2139122 1.12% 11850
chr5 2184551 1.20% 12185
chr6 1963807 1.15% 11242
chr7 3032763 1.90% 16583
chr8 2130010 1.47% 11562
chr9 2569768 1.86% 13651
chr10 2578923 1.93% 13831
chr11 3269297 2.42% 17199
chr12 2468995 1.85% 13562
chr13 893118 0.78% 5172
chr14 1807474 1.69% 9579
chr15 1502743 1.47% 8325
chr16 2931556 3.25% 15479
chr17 3611572 4.34% 19068
chr18 741108 0.92% 4334
chr19 2837503 4.84% 14755
chr20 2098073 3.26% 10987
chr21 946544 2.03% 4967
chr22 2558180 5.03% 13088
chrX 1182212 0.76% 6959
chrY 5665 0.01% 52
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 294208 1 1060 184.84 180
global segment-length histogram

Files

Filename Size md5
ENCFF085RUK.bed.gz 2.86 MB 15725426cd10e776a84ed75766f653ed
ENCFF085RUK.tabix.bed.gz 2.65 MB c1dd58aacb604cde0d8a39aea0408cea
ENCFF085RUK.tabix.bed.gz.tbi 468.73 KB 179d117e89d69b8a1223e7d8364181d0
genomic_resource.yaml 1.47 KB 2bda09e9de0e958e16fbecad1119408d
statistics/