DNase-seq_ENCSR429RHR
DNase-seq ENCSR429RHR [biosample_summary="Homo sapiens RKO"]
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| Id: | DNase-seq/ENCSR429RHR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR429RHR [biosample_summary="Homo sapiens RKO"] |
| Description: |
status: released biological_replicates: Rep 2 summary: output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF290RFC|/files/ENCFF290RFC/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.32. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF881HKH|/files/ENCFF881HKH/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.39. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR429RHR | float |
DNase-seq_ENCSR429RHR |
DNase-seq ENCSR429RHR [biosample_summary="Homo sapiens RKO"]
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[0.0331, 40.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF778MLM.bed.gz | 1.53 MB | 5b36e51a354ec7710d81940cbe75d1b8 |
| ENCFF778MLM.bed.gz.dvc | 101.0 B | d349415caa3587a381529b3f6ab5c45b |
| ENCFF778MLM.tabix.bed.gz | 1.39 MB | 4c08abd9cecc1b7800e24792a1c1ef6d |
| ENCFF778MLM.tabix.bed.gz.dvc | 107.0 B | 9857bb871631b2abedb0b07f50301173 |
| ENCFF778MLM.tabix.bed.gz.tbi | 544.7 KB | d0b29164886fd860664a159b68afd9a4 |
| ENCFF778MLM.tabix.bed.gz.tbi.dvc | 110.0 B | 604372e29ed1abbe1581cd0bc1fbac33 |
| genomic_resource.yaml | 2.76 KB | 6c1749569c11fe1ab089ac825067fc7c |
| genomic_resource_original.yaml | 2.69 KB | c88166e91be04ba6d2cd7ca65e82c3f0 |
| statistics/ |