| Id: | DNase-seq/ENCSR428ZCP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR428ZCP [biosample_summary="Homo sapiens with Cognitive impairment, Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with Cognitive impairment, Alzheimer's disease output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF446JDN|/files/ENCFF446JDN/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.37. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR428ZCP | float |
DNase-seq_ENCSR428ZCP |
DNase-seq ENCSR428ZCP [biosample_summary="Homo sapiens with Cognitive impairment, Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)"]
|
 |
[0.0622, 20.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF367PTQ.bed.gz | 807.58 KB | a0cddca5e05cca4067e02c166eb18153 |
| ENCFF367PTQ.bed.gz.dvc | 100.0 B | be78e5b0213ea096fee16e02a8c83685 |
| ENCFF367PTQ.tabix.bed.gz | 738.05 KB | b18b5ec25adbc018a8f06859cd717a0c |
| ENCFF367PTQ.tabix.bed.gz.dvc | 106.0 B | 9676f6f0ba5c6f4d19f1b02b8a7faa5c |
| ENCFF367PTQ.tabix.bed.gz.tbi | 290.48 KB | fe583b30dddc0d498f6e47824e9d2f0a |
| ENCFF367PTQ.tabix.bed.gz.tbi.dvc | 110.0 B | 9e59d7ee89d5b7bc2bb927b95b6c3958 |
| genomic_resource.yaml | 2.39 KB | ea33f3a90d02ea80edf6e965019fffb5 |
| genomic_resource_original.yaml | 2.22 KB | 715a96eab6031c61f7c5b27091368095 |
| statistics/ |