Resource

Id DNase-seq/ENCSR426TPQcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR426TPQ [biosample_summary="Homo sapiens psoas muscle tissue male child (3 years)"]
Description
Labels
  • accession: ENCSR426TPQ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0008450/
  • biosample_summary: Homo sapiens psoas muscle tissue male child (3 years)
  • date_created: 2015-09-16T21:43:06.334199+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR426TPQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male child (3 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR426TPQ float

DNase-seq_ENCSR426TPQ
DNase-seq ENCSR426TPQ [biosample_summary="Homo sapiens psoas muscle tissue male child (3 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR426TPQ [6, 8.55e+03]
n
37,921,962
mean
251
sd
443

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 379219621.18% 252512
chr1 3499874 1.41% 23313
chr2 3103862 1.28% 20674
chr3 2573777 1.30% 17143
chr4 1805408 0.95% 12014
chr5 2084443 1.15% 13881
chr6 2253418 1.32% 15002
chr7 1882104 1.18% 12531
chr8 1738285 1.20% 11573
chr9 1652203 1.19% 11005
chr10 1907530 1.43% 12704
chr11 1869733 1.38% 12451
chr12 1840560 1.38% 12255
chr13 973994 0.85% 6484
chr14 1214272 1.13% 8084
chr15 1234565 1.21% 8225
chr16 1218053 1.35% 8111
chr17 1635099 1.96% 10889
chr18 820846 1.02% 5467
chr19 1224736 2.09% 8155
chr20 1017685 1.58% 6773
chr21 452122 0.97% 3011
chr22 674075 1.33% 4487
chrX 1162818 0.75% 7732
chrY 82500 0.14% 548
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 252512 10 600 150.18 150
global segment-length histogram

Files

Filename Size md5
ENCFF488OAJ.bed.gz 2.42 MB 87350481d9022319abc446689d4c8fab
ENCFF488OAJ.tabix.bed.gz 2.08 MB 80f7c2b47de1c786ad2a79afadc52d52
ENCFF488OAJ.tabix.bed.gz.tbi 693.98 KB e41c7517270b5aca0b87aa7f12bc7d55
genomic_resource.yaml 1.39 KB 0ba32ad475eef2290fd41d401aa9ddda
statistics/