Resource

Id DNase-seq/ENCSR426KLJcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR426KLJ [biosample_summary="Homo sapiens with Cognitive impairment, Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (87 years)"]
Description
Labels
  • accession: ENCSR426KLJ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with Cognitive impairment, Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (87 years)
  • date_created: 2020-05-28T00:56:22.277201+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR426KLJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (87 years) with Cognitive impairment, Alzheimer's disease
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR426KLJ float

DNase-seq_ENCSR426KLJ
DNase-seq ENCSR426KLJ [biosample_summary="Homo sapiens with Cognitive impairment, Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (87 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR426KLJ [0.0641, 32.1]
n
13,617,598
mean
1.7
sd
2.38

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 136175980.42% 70620
chr1 1175482 0.47% 6075
chr2 1056698 0.44% 5518
chr3 659401 0.33% 3479
chr4 572782 0.30% 2903
chr5 600932 0.33% 3172
chr6 525579 0.31% 2845
chr7 737376 0.46% 3812
chr8 615138 0.42% 3156
chr9 645304 0.47% 3334
chr10 772144 0.58% 3943
chr11 901279 0.67% 4630
chr12 518375 0.39% 2733
chr13 255318 0.22% 1307
chr14 429684 0.40% 2238
chr15 432274 0.42% 2262
chr16 548856 0.61% 2842
chr17 775289 0.93% 4083
chr18 211015 0.26% 1138
chr19 683317 1.17% 3459
chr20 400985 0.62% 2075
chr21 244421 0.52% 1251
chr22 565276 1.11% 2857
chrX 289669 0.19% 1500
chrY 1004 <0.01% 8
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 70620 1 1060 192.83 180
global segment-length histogram

Files

Filename Size md5
ENCFF230CUT.bed.gz 741.31 KB 483c0c576286d84a58ace64e3bcfe760
ENCFF230CUT.tabix.bed.gz 680.82 KB dbc57210846ae775bcbaaea306454154
ENCFF230CUT.tabix.bed.gz.tbi 226.81 KB 0deadfba16c5d68da63db32344154369
genomic_resource.yaml 1.53 KB 876d5959ed59249937045dfb591be00f
statistics/