Resource

Id DNase-seq/ENCSR426IEAcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR426IEA [biosample_summary="Homo sapiens KBM-7"]
Description
Labels
  • accession: ENCSR426IEA
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0005903/
  • biosample_summary: Homo sapiens KBM-7
  • date_created: 2014-09-26T06:22:10.992674+00:00
  • date_released: 2015-08-18
  • doi: 10.17989/ENCSR426IEA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR426IEA float

DNase-seq_ENCSR426IEA
DNase-seq ENCSR426IEA [biosample_summary="Homo sapiens KBM-7"]
 HISTOGRAM FOR DNase-seq_ENCSR426IEA [4, 7.63e+04]
n
31,818,386
mean
256
sd
534

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 318183860.99% 211600
chr1 2850566 1.15% 18972
chr2 2490883 1.03% 16571
chr3 2057352 1.04% 13672
chr4 1611543 0.85% 10701
chr5 1733160 0.95% 11516
chr6 1888956 1.11% 12555
chr7 1607081 1.01% 10690
chr8 1739952 1.20% 11571
chr9 1239289 0.90% 8234
chr10 1423695 1.06% 9476
chr11 1458203 1.08% 9701
chr12 1659319 1.25% 11029
chr13 892975 0.78% 5937
chr14 959270 0.90% 6383
chr15 1072821 1.05% 7139
chr16 1002041 1.11% 6668
chr17 1309547 1.57% 8714
chr18 679152 0.84% 4514
chr19 1063802 1.81% 7084
chr20 742538 1.15% 4941
chr21 395361 0.85% 2629
chr22 543394 1.07% 3615
chrX 1303286 0.84% 8661
chrY 94200 0.16% 627
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 211600 4 450 150.37 150
global segment-length histogram

Files

Filename Size md5
ENCFF384AQH.bed.gz 2.03 MB 10f5eb7f9002fdc30b06b7106ddcbd21
ENCFF384AQH.tabix.bed.gz 1.75 MB 2f7a8ddb25eaf3e1c0a8a73b584bdfbf
ENCFF384AQH.tabix.bed.gz.tbi 682.52 KB 318929837d39944e2d78d75af9639fe4
genomic_resource.yaml 1.25 KB a9ec53b9670a193cf8ef03bb2d71f61e
statistics/