DNase-seq_ENCSR424JPH
DNase-seq ENCSR424JPH [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell female adult (33 years)"]
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| Id: | DNase-seq/ENCSR424JPH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR424JPH [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell female adult (33 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (33 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF934OOR|/files/ENCFF934OOR/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.39. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR424JPH | float |
DNase-seq_ENCSR424JPH |
DNase-seq ENCSR424JPH [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell female adult (33 years)"]
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[0.0474, 36.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF887MDX.bed.gz | 674.44 KB | 0f230d4c63f1cd2934686ddaa25758b4 |
| ENCFF887MDX.bed.gz.dvc | 100.0 B | 8641ba7dde9351ee869d6e3547e3e8f3 |
| ENCFF887MDX.tabix.bed.gz | 622.14 KB | 4a698adebd741e8e9bf2e44e12cefd30 |
| ENCFF887MDX.tabix.bed.gz.dvc | 106.0 B | 03298538dc302a7e41a3426fe78fd6c0 |
| ENCFF887MDX.tabix.bed.gz.tbi | 203.31 KB | e1f496c12a4a262428d4e00848b948ed |
| ENCFF887MDX.tabix.bed.gz.tbi.dvc | 110.0 B | f210ee0f2bd6c843933d505d466ed119 |
| genomic_resource.yaml | 2.09 KB | 53c143cddbbcaf18e1263b2b427d4d84 |
| genomic_resource_original.yaml | 1.97 KB | 2bee681d9cc5ad447be934aafb5129b3 |
| statistics/ |