Resource

Id DNase-seq/ENCSR420RWUcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR420RWU [biosample_summary="Homo sapiens brain tissue male embryo (105 days)"]
Description
Labels
  • accession: ENCSR420RWU
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000955/
  • biosample_summary: Homo sapiens brain tissue male embryo (105 days)
  • date_created: 2018-03-28T18:35:27.996077+00:00
  • date_released: 2018-05-09
  • doi: 10.17989/ENCSR420RWU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (105 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR420RWU float

DNase-seq_ENCSR420RWU
DNase-seq ENCSR420RWU [biosample_summary="Homo sapiens brain tissue male embryo (105 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR420RWU [3, 729]
n
11,287,146
mean
43.9
sd
49.6

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 112871460.35% 74886
chr1 988125 0.40% 6555
chr2 925545 0.38% 6147
chr3 766423 0.39% 5083
chr4 624392 0.33% 4143
chr5 674739 0.37% 4471
chr6 697956 0.41% 4628
chr7 609854 0.38% 4046
chr8 563085 0.39% 3735
chr9 466896 0.34% 3098
chr10 506992 0.38% 3367
chr11 580938 0.43% 3854
chr12 570261 0.43% 3784
chr13 344739 0.30% 2278
chr14 372329 0.35% 2469
chr15 334888 0.33% 2221
chr16 335979 0.37% 2228
chr17 406093 0.49% 2692
chr18 269851 0.34% 1786
chr19 361908 0.62% 2409
chr20 259824 0.40% 1727
chr21 122066 0.26% 812
chr22 163436 0.32% 1089
chrX 328677 0.21% 2183
chrY 12150 0.02% 81
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 74886 15 450 150.72 150
global segment-length histogram

Files

Filename Size md5
ENCFF409PTH.bed.gz 717.78 KB 5f8d2d8bc40b330000f72741fed097cb
ENCFF409PTH.tabix.bed.gz 618.93 KB 5d71c2b611c1c08b410e5f52d7919903
ENCFF409PTH.tabix.bed.gz.tbi 380.53 KB ea100ae13c196a0581db9d08188001dc
genomic_resource.yaml 1.38 KB 0a40f111c0e616e8125f25f54a353b6c
statistics/