Resource

Id DNase-seq/ENCSR420HOTcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR420HOT [biosample_summary="Homo sapiens T-cell male adult (38 years)"]
Description
Labels
  • accession: ENCSR420HOT
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell male adult (38 years)
  • date_created: 2020-04-19T18:36:50.602271+00:00
  • date_released: 2020-09-25
  • doi: 10.17989/ENCSR420HOT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR420HOT float

DNase-seq_ENCSR420HOT
DNase-seq ENCSR420HOT [biosample_summary="Homo sapiens T-cell male adult (38 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR420HOT [0.118, 22.4]
n
8,281,403
mean
3.15
sd
2.48

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 82814030.26% 37204
chr1 852427 0.34% 3802
chr2 555234 0.23% 2496
chr3 428106 0.22% 1904
chr4 281067 0.15% 1238
chr5 376176 0.21% 1682
chr6 474273 0.28% 2111
chr7 378415 0.24% 1737
chr8 292573 0.20% 1356
chr9 333028 0.24% 1497
chr10 367412 0.27% 1645
chr11 413570 0.31% 1874
chr12 426475 0.32% 1896
chr13 166324 0.15% 724
chr14 294219 0.27% 1297
chr15 265919 0.26% 1211
chr16 356065 0.39% 1617
chr17 525736 0.63% 2357
chr18 109311 0.14% 495
chr19 596194 1.02% 2576
chr20 226636 0.35% 1075
chr21 101325 0.22% 489
chr22 215882 0.42% 1002
chrX 234358 0.15% 1073
chrY 10678 0.02% 50
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 37204 7 1040 222.59 200
global segment-length histogram

Files

Filename Size md5
ENCFF841WHD.bed.gz 405.66 KB 70b788e55c6f60a69fd0b2ad03c8e6ed
ENCFF841WHD.tabix.bed.gz 373.73 KB 45572fe465edee29bf73eb3e6eb30d1e
ENCFF841WHD.tabix.bed.gz.tbi 187.55 KB 743735c73184b90bed185956f3bd6e7f
genomic_resource.yaml 2.0 KB e70a459444b07b8b5d5360db3de99e04
statistics/