DNase-seq_ENCSR420HOT
DNase-seq ENCSR420HOT [biosample_summary="Homo sapiens T-cell male adult (38 years)"]
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| Id: | DNase-seq/ENCSR420HOT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR420HOT [biosample_summary="Homo sapiens T-cell male adult (38 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF425CQF|/files/ENCFF425CQF/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.38. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR420HOT | float |
DNase-seq_ENCSR420HOT |
DNase-seq ENCSR420HOT [biosample_summary="Homo sapiens T-cell male adult (38 years)"]
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[0.118, 22.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF841WHD.bed.gz | 405.66 KB | 70b788e55c6f60a69fd0b2ad03c8e6ed |
| ENCFF841WHD.bed.gz.dvc | 100.0 B | 07c4a207c446c327319b6cb6b41e46d4 |
| ENCFF841WHD.tabix.bed.gz | 373.73 KB | 45572fe465edee29bf73eb3e6eb30d1e |
| ENCFF841WHD.tabix.bed.gz.dvc | 106.0 B | 9c6008f7381f8a210b4153a77006f8bf |
| ENCFF841WHD.tabix.bed.gz.tbi | 187.55 KB | 743735c73184b90bed185956f3bd6e7f |
| ENCFF841WHD.tabix.bed.gz.tbi.dvc | 110.0 B | f3cce6a4106cc68b7331dd69cbc2c758 |
| genomic_resource.yaml | 2.0 KB | e70a459444b07b8b5d5360db3de99e04 |
| genomic_resource_original.yaml | 1.91 KB | fcbb607ad5e96812c424d1ccc1e0809d |
| statistics/ |