Resource

Id DNase-seq/ENCSR419OARcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR419OAR [biosample_summary="Homo sapiens T-cell male adult (24 years)"]
Description
Labels
  • accession: ENCSR419OAR
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell male adult (24 years)
  • date_created: 2020-04-12T18:59:13.805746+00:00
  • date_released: 2020-09-25
  • doi: 10.17989/ENCSR419OAR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (24 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR419OAR float

DNase-seq_ENCSR419OAR

DNase-seq ENCSR419OAR [biosample_summary="Homo sapiens T-cell male adult (24 years)"]
HISTOGRAM FOR DNase-seq_ENCSR419OAR [0.216, 126]
n
9,028,834
mean
8.74
sd
13.5

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 90288340.28% 50033
chr1 896878 0.36% 4965
chr2 639285 0.26% 3563
chr3 492359 0.25% 2754
chr4 310413 0.16% 1737
chr5 401443 0.22% 2245
chr6 526004 0.31% 2907
chr7 425228 0.27% 2388
chr8 329935 0.23% 1843
chr9 360255 0.26% 1999
chr10 406266 0.30% 2266
chr11 458322 0.34% 2565
chr12 452375 0.34% 2506
chr13 187318 0.16% 1032
chr14 320196 0.30% 1759
chr15 287368 0.28% 1609
chr16 371897 0.41% 2046
chr17 549825 0.66% 3015
chr18 145669 0.18% 808
chr19 586930 1.00% 3147
chr20 260192 0.40% 1449
chr21 114952 0.25% 633
chr22 222809 0.44% 1247
chrX 271781 0.17% 1490
chrY 11134 0.02% 60
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 50033 4 660 180.46 180
global segment-length histogram

Files

Filename Size md5
ENCFF082UVI.bed.gz 558.42 KB 1cbc143f8880c4679ea055759aca69e8
ENCFF082UVI.tabix.bed.gz 507.71 KB 6491320da6ddcf90258f1531eb93798f
ENCFF082UVI.tabix.bed.gz.tbi 240.99 KB 66c1a0b2e30cfb1db99fe851094fdcee
genomic_resource.yaml 1.18 KB 6837834fa2baa8dde40e8313895053fb
statistics/