DNase-seq_ENCSR419MZH
DNase-seq ENCSR419MZH [biosample_summary="Homo sapiens adrenal gland tissue female embryo (108 days)"]
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| Id: | DNase-seq/ENCSR419MZH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR419MZH [biosample_summary="Homo sapiens adrenal gland tissue female embryo (108 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (108 days) output_type: peaks audit_warning: Alignment file {ENCFF729HDS|/files/ENCFF729HDS/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 27129463 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF729HDS|/files/ENCFF729HDS/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.30. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR419MZH | float |
DNase-seq_ENCSR419MZH |
DNase-seq ENCSR419MZH [biosample_summary="Homo sapiens adrenal gland tissue female embryo (108 days)"]
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[0.296, 18.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF101DAL.bed.gz | 532.98 KB | c257bfeee63e1ab26d7e4172b6a88eec |
| ENCFF101DAL.bed.gz.dvc | 100.0 B | 4a506a466e55eac7319203c35633b5e8 |
| ENCFF101DAL.tabix.bed.gz | 474.14 KB | e8680bccfea5291ff619362dfb2a5359 |
| ENCFF101DAL.tabix.bed.gz.dvc | 106.0 B | 7f93a2560dbfe321da0052210194fcee |
| ENCFF101DAL.tabix.bed.gz.tbi | 296.53 KB | 65770cda83fc32068185b1004029d586 |
| ENCFF101DAL.tabix.bed.gz.tbi.dvc | 110.0 B | 3ec5f4749c245a29ca31f39b1787bb5c |
| genomic_resource.yaml | 2.67 KB | aef85ac818cb911c97e2d4d2d05513ef |
| genomic_resource_original.yaml | 2.57 KB | 5c6f639c4d4a8ac81c7d873f49b2e108 |
| statistics/ |