DNase-seq_ENCSR419KXU
DNase-seq ENCSR419KXU [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR419KXU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR419KXU [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with Alzheimer's disease output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF418AJG|/files/ENCFF418AJG/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.27. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR419KXU | float |
DNase-seq_ENCSR419KXU |
DNase-seq ENCSR419KXU [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)"]
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[0.0699, 10.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF631LZV.bed.gz | 568.71 KB | e5b4cc83343678576d16078c00ccbfef |
| ENCFF631LZV.bed.gz.dvc | 100.0 B | 7201143324b85e1f3b2b8a701ee9e62a |
| ENCFF631LZV.tabix.bed.gz | 531.1 KB | 1f56984b349569757f54cae1a0436bf7 |
| ENCFF631LZV.tabix.bed.gz.dvc | 106.0 B | 47edc190c945dac8876942fe110424bc |
| ENCFF631LZV.tabix.bed.gz.tbi | 176.8 KB | 74e6c9deeb2db07cc147381fb66b156f |
| ENCFF631LZV.tabix.bed.gz.tbi.dvc | 110.0 B | 2255be1b0916b1bb3694b3ad3c7d6be6 |
| genomic_resource.yaml | 2.28 KB | ab6f60b2cf9d71823422396e01103524 |
| genomic_resource_original.yaml | 2.12 KB | b34c68bed0c84f7c6ccd1388b8075c76 |
| statistics/ |