| Id: | DNase-seq/ENCSR419CKG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR419CKG [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-4 for 1 hour"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-4 for 1 hour output_type: peaks audit_warning: Alignment file {ENCFF373MWN|/files/ENCFF373MWN/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 30617340 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR419CKG | float |
DNase-seq_ENCSR419CKG |
DNase-seq ENCSR419CKG [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-4 for 1 hour"]
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[0.262, 66.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF575GIX.bed.gz | 398.47 KB | 5ac3c5f56e2f3c687bd5b7ddffbe9f9c |
| ENCFF575GIX.bed.gz.dvc | 100.0 B | f0ba6bcfbbd29e330ec08260affa1548 |
| ENCFF575GIX.tabix.bed.gz | 362.62 KB | 664523c69277f7b65a90faffd1d29800 |
| ENCFF575GIX.tabix.bed.gz.dvc | 106.0 B | f9121abde5f278a7c7c186d22de432ac |
| ENCFF575GIX.tabix.bed.gz.tbi | 193.38 KB | 0e06a8293dbd14f843a3a15b1ac15c31 |
| ENCFF575GIX.tabix.bed.gz.tbi.dvc | 110.0 B | 304f9529eac56124cf7973d91a008576 |
| genomic_resource.yaml | 2.43 KB | e2c4617ca05b8657831359a21dc0b76a |
| genomic_resource_original.yaml | 2.21 KB | 9b2f361577c9ac2dc1a9f32fb6592c22 |
| statistics/ |