DNase-seq_ENCSR417LPB
DNase-seq ENCSR417LPB [biosample_summary="Homo sapiens with Cognitive impairment; head of caudate nucleus tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR417LPB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR417LPB [biosample_summary="Homo sapiens with Cognitive impairment; head of caudate nucleus tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with Cognitive impairment output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF251HNN|/files/ENCFF251HNN/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.34. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR417LPB | float |
DNase-seq_ENCSR417LPB |
DNase-seq ENCSR417LPB [biosample_summary="Homo sapiens with Cognitive impairment; head of caudate nucleus tissue female adult (90 or above years)"]
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[0.0593, 16] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF853FXM.bed.gz | 1.11 MB | bfc64f1a103156070f88a3dca9eaaba4 |
| ENCFF853FXM.bed.gz.dvc | 101.0 B | 11c032655f292aa7be03647adf990f59 |
| ENCFF853FXM.tabix.bed.gz | 1.01 MB | c351ab02ecc95987c61b73834a7b3273 |
| ENCFF853FXM.tabix.bed.gz.dvc | 107.0 B | 3b174174a50bd3a301efca14b79e0fc0 |
| ENCFF853FXM.tabix.bed.gz.tbi | 415.72 KB | e96984a79c1e09bdbbeb259d06aaa124 |
| ENCFF853FXM.tabix.bed.gz.tbi.dvc | 110.0 B | e56ffe5ef481cbcac7646400bfec6e15 |
| genomic_resource.yaml | 2.25 KB | d8be02bb4e912ae5fabd77e0959f32b6 |
| genomic_resource_original.yaml | 2.1 KB | d87fba98732df60c68cf0d6ae433bf14 |
| statistics/ |