Resource

Id DNase-seq/ENCSR416QNAcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR416QNA [biosample_summary="Homo sapiens activated T-cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours"]
Description
Labels
  • accession: ENCSR416QNA
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000537/
  • biosample_summary: Homo sapiens activated T-cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours
  • date_created: 2020-04-18T05:21:36.757261+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR416QNA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR416QNA float

DNase-seq_ENCSR416QNA
DNase-seq ENCSR416QNA [biosample_summary="Homo sapiens activated T-cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR416QNA [0.531, 45.6]
n
6,149,093
mean
7.12
sd
5.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 61490930.19% 29985
chr1 643472 0.26% 3138
chr2 423579 0.17% 2065
chr3 338061 0.17% 1645
chr4 211750 0.11% 1006
chr5 273278 0.15% 1378
chr6 366621 0.21% 1777
chr7 277751 0.17% 1365
chr8 220014 0.15% 1095
chr9 253007 0.18% 1229
chr10 259714 0.19% 1287
chr11 313090 0.23% 1496
chr12 321990 0.24% 1542
chr13 128414 0.11% 609
chr14 205214 0.19% 1020
chr15 198030 0.19% 1001
chr16 261453 0.29% 1275
chr17 368687 0.44% 1785
chr18 89044 0.11% 450
chr19 436193 0.74% 2052
chr20 163943 0.25% 829
chr21 68358 0.15% 348
chr22 151757 0.30% 746
chrX 175673 0.11% 847
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 29985 7 820 205.07 200
global segment-length histogram

Files

Filename Size md5
ENCFF104NRI.bed.gz 324.15 KB fc698b67282e4506bcbfc2b4844f127f
ENCFF104NRI.tabix.bed.gz 292.35 KB f97085537cc660d249a7f34a65435c76
ENCFF104NRI.tabix.bed.gz.tbi 172.02 KB 19b703c20fc1d2eb8786a600fd3f2f69
genomic_resource.yaml 2.33 KB d5b53e41ca7eda8332cb17ed9b30f41d
statistics/