| Id: | DNase-seq/ENCSR416QNA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR416QNA [biosample_summary="Homo sapiens activated T-cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours output_type: peaks audit_error: Alignment file {ENCFF170OUD|/files/ENCFF170OUD/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 18898126 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR416QNA | float |
DNase-seq_ENCSR416QNA |
DNase-seq ENCSR416QNA [biosample_summary="Homo sapiens activated T-cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours"]
|
 |
[0.531, 45.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF104NRI.bed.gz | 324.15 KB | fc698b67282e4506bcbfc2b4844f127f |
| ENCFF104NRI.bed.gz.dvc | 100.0 B | 6fea66124e993aba0cec9e072e56fb7b |
| ENCFF104NRI.tabix.bed.gz | 292.35 KB | f97085537cc660d249a7f34a65435c76 |
| ENCFF104NRI.tabix.bed.gz.dvc | 106.0 B | ee937ba47755ced06eb8d58a41d83934 |
| ENCFF104NRI.tabix.bed.gz.tbi | 172.02 KB | 19b703c20fc1d2eb8786a600fd3f2f69 |
| ENCFF104NRI.tabix.bed.gz.tbi.dvc | 110.0 B | 6ad633c8044616077a3dcc3f9dc9f4fe |
| genomic_resource.yaml | 2.33 KB | d5b53e41ca7eda8332cb17ed9b30f41d |
| genomic_resource_original.yaml | 2.14 KB | a5016f99417183fd2d64c6c6928e3a52 |
| statistics/ |