Resource
| Id | DNase-seq/ENCSR414ZUA |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR414ZUA [biosample_summary="Homo sapiens right kidney tissue male embryo (108 days)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male embryo (108 days) output_type: peaks audit_internal_action: Archived analysis {ENCAN832YWZ|/analyses/ENCAN832YWZ/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF183FEC|/files/ENCFF183FEC/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 25534039 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF004DBD|/files/ENCFF004DBD/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 25376901 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR414ZUA | float |
DNase-seq_ENCSR414ZUA |
DNase-seq ENCSR414ZUA [biosample_summary="Homo sapiens right kidney tissue male embryo (108 days)"]
|
 |
[2, 535] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 10783941 | 0.34% | 71597 |
| chr1 | 970048 | 0.39% | 6448 |
| chr2 | 858258 | 0.35% | 5701 |
| chr3 | 706321 | 0.36% | 4686 |
| chr4 | 587837 | 0.31% | 3893 |
| chr5 | 614382 | 0.34% | 4071 |
| chr6 | 651555 | 0.38% | 4328 |
| chr7 | 550307 | 0.35% | 3652 |
| chr8 | 499666 | 0.34% | 3311 |
| chr9 | 448181 | 0.32% | 2976 |
| chr10 | 518623 | 0.39% | 3442 |
| chr11 | 559907 | 0.41% | 3721 |
| chr12 | 557104 | 0.42% | 3694 |
| chr13 | 298213 | 0.26% | 1975 |
| chr14 | 342449 | 0.32% | 2277 |
| chr15 | 346369 | 0.34% | 2297 |
| chr16 | 349326 | 0.39% | 2328 |
| chr17 | 420918 | 0.51% | 2794 |
| chr18 | 243867 | 0.30% | 1621 |
| chr19 | 388627 | 0.66% | 2588 |
| chr20 | 275856 | 0.43% | 1836 |
| chr21 | 121912 | 0.26% | 810 |
| chr22 | 177795 | 0.35% | 1185 |
| chrX | 286520 | 0.18% | 1898 |
| chrY | 9900 | 0.02% | 65 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 71597 | 55 | 442 | 150.62 | 150 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF727HFV.bed.gz | 696.94 KB | b1fad13be83b65e3381bfacb0f5b0e86 |
| ENCFF727HFV.tabix.bed.gz | 596.04 KB | 99bac1f508a0a00f772d0b7a2214b071 |
| ENCFF727HFV.tabix.bed.gz.tbi | 383.72 KB | c13a3c2256d10c4e25f715a5ae4bfd89 |
| genomic_resource.yaml | 2.59 KB | 823583bee8be821040c8915eafc6a118 |
| statistics/ |