DNase-seq_ENCSR414ZUA
DNase-seq ENCSR414ZUA [biosample_summary="Homo sapiens right kidney tissue male embryo (108 days)"]
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| Id: | DNase-seq/ENCSR414ZUA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR414ZUA [biosample_summary="Homo sapiens right kidney tissue male embryo (108 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male embryo (108 days) output_type: peaks audit_internal_action: Archived analysis {ENCAN832YWZ|/analyses/ENCAN832YWZ/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF183FEC|/files/ENCFF183FEC/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 25534039 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF004DBD|/files/ENCFF004DBD/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 25376901 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR414ZUA | float |
DNase-seq_ENCSR414ZUA |
DNase-seq ENCSR414ZUA [biosample_summary="Homo sapiens right kidney tissue male embryo (108 days)"]
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[2, 535] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF727HFV.bed.gz | 696.94 KB | b1fad13be83b65e3381bfacb0f5b0e86 |
| ENCFF727HFV.bed.gz.dvc | 100.0 B | edd943569dd142c018112c9e38021c8d |
| ENCFF727HFV.tabix.bed.gz | 596.04 KB | 99bac1f508a0a00f772d0b7a2214b071 |
| ENCFF727HFV.tabix.bed.gz.dvc | 106.0 B | 9f2879f7fbaabd5d2248cad7c7528dc3 |
| ENCFF727HFV.tabix.bed.gz.tbi | 383.72 KB | c13a3c2256d10c4e25f715a5ae4bfd89 |
| ENCFF727HFV.tabix.bed.gz.tbi.dvc | 110.0 B | 2c86cbaf571f39b83b1e9f184920e545 |
| genomic_resource.yaml | 2.59 KB | 823583bee8be821040c8915eafc6a118 |
| genomic_resource_original.yaml | 2.49 KB | 29241dda2cca5a92e749182face74e06 |
| statistics/ |