DNase-seq_ENCSR412NMI
DNase-seq ENCSR412NMI [biosample_summary="Homo sapiens left cardiac atrium tissue female embryo (101 days)"]
×
| Id: | DNase-seq/ENCSR412NMI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR412NMI [biosample_summary="Homo sapiens left cardiac atrium tissue female embryo (101 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (101 days) output_type: peaks audit_internal_action: Released analysis {ENCAN031NME|/analyses/ENCAN031NME/} has in progress subobject document {e34079a8-4e19-45aa-a0f4-bad3944e775e|/documents/e34079a8-4e19-45aa-a0f4-bad3944e775e/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF014DVT|/files/ENCFF014DVT/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.36. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR412NMI | float |
DNase-seq_ENCSR412NMI |
DNase-seq ENCSR412NMI [biosample_summary="Homo sapiens left cardiac atrium tissue female embryo (101 days)"]
|
|
[0.0538, 17.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF393UZI.bed.gz | 1.16 MB | 8fb39fc74b637beddaf80bb137ddd697 |
| ENCFF393UZI.bed.gz.dvc | 101.0 B | 27828be9bd2591a5c267e147a623f668 |
| ENCFF393UZI.tabix.bed.gz | 1.06 MB | 450e1d0505db98dd7da1d2b1575d37a6 |
| ENCFF393UZI.tabix.bed.gz.dvc | 107.0 B | b457c730d65bdf2610d5e69a9c681404 |
| ENCFF393UZI.tabix.bed.gz.tbi | 438.3 KB | 50eff1d28bf7e5d782dbdb433d4cb222 |
| ENCFF393UZI.tabix.bed.gz.tbi.dvc | 110.0 B | e33ff6b752d6dc4246f625840419f6c1 |
| genomic_resource.yaml | 2.29 KB | 150bd0018a7d70593fff5d3090ea4651 |
| genomic_resource_original.yaml | 2.18 KB | 6829425cbf73d02f7928a69b023fa8e3 |
| statistics/ |