DNase-seq_ENCSR411MGY
DNase-seq ENCSR411MGY [biosample_summary="Homo sapiens muscle of trunk tissue female embryo (121 days)"]
×
| Id: | DNase-seq/ENCSR411MGY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR411MGY [biosample_summary="Homo sapiens muscle of trunk tissue female embryo (121 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (121 days) output_type: peaks audit_warning: Alignment file {ENCFF793SQU|/files/ENCFF793SQU/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 43388250 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF793SQU|/files/ENCFF793SQU/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.36. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR411MGY | float |
DNase-seq_ENCSR411MGY |
DNase-seq ENCSR411MGY [biosample_summary="Homo sapiens muscle of trunk tissue female embryo (121 days)"]
|
|
[0.185, 16.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF014FUK.bed.gz | 762.6 KB | a07e2840f974f97f4be8b15010bfab76 |
| ENCFF014FUK.bed.gz.dvc | 100.0 B | 016bc5553f479dd17af6ce3b8fddcf5c |
| ENCFF014FUK.tabix.bed.gz | 686.26 KB | 66bd6a99f9aa60996fdf7148fa42c9aa |
| ENCFF014FUK.tabix.bed.gz.dvc | 106.0 B | f79c361ed042dbcbb1d69661cc8ad1de |
| ENCFF014FUK.tabix.bed.gz.tbi | 371.66 KB | 5a5f75455fd6a335eb7b69a522a2c4f3 |
| ENCFF014FUK.tabix.bed.gz.tbi.dvc | 110.0 B | bd6c81557e013d82a7ecb24b05196688 |
| genomic_resource.yaml | 2.68 KB | 1de6df37a0fbf6396894b8a9c40aebed |
| genomic_resource_original.yaml | 2.57 KB | 08e1f46ec4c7684c034e57cb65624772 |
| statistics/ |