DNase-seq_ENCSR410MFU
DNase-seq ENCSR410MFU [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (88 years)"]
×
| Id: | DNase-seq/ENCSR410MFU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR410MFU [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (88 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (88 years) with mild cognitive impairment output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF389DQK|/files/ENCFF389DQK/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.37. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR410MFU | float |
DNase-seq_ENCSR410MFU |
DNase-seq ENCSR410MFU [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (88 years)"]
|
|
[0.0349, 20.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF903YKY.bed.gz | 1.49 MB | debf7fed2de4aa62466746dac89eb999 |
| ENCFF903YKY.bed.gz.dvc | 101.0 B | c24ec7c2af1f2d633c7b735d119a734f |
| ENCFF903YKY.tabix.bed.gz | 1.37 MB | b1bdb9c74327d137473a679fb70cb190 |
| ENCFF903YKY.tabix.bed.gz.dvc | 107.0 B | e7ec51cd58a8c27e30e86bad367438d7 |
| ENCFF903YKY.tabix.bed.gz.tbi | 434.62 KB | ecb572878202868cd83b1b4517387510 |
| ENCFF903YKY.tabix.bed.gz.tbi.dvc | 110.0 B | e82d466384bd0eeaff2159e28b9e6f95 |
| genomic_resource.yaml | 2.23 KB | e5721e572aaf2ffffeab5e6c84d5b927 |
| genomic_resource_original.yaml | 2.08 KB | f3e5089cedf8585576fdf8c8765e5551 |
| statistics/ |