| Id: | DNase-seq/ENCSR409ZBD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR409ZBD [biosample_summary="Homo sapiens natural killer cell male adult (47 years) treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-15 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-18 for 72 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (47 years) treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-15 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-18 for 72 hours output_type: peaks audit_error: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF286KKJ|/files/ENCFF286KKJ/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.24. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR409ZBD | float |
DNase-seq_ENCSR409ZBD |
DNase-seq ENCSR409ZBD [biosample_summary="Homo sapiens natural killer cell male adult (47 years) treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-15 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-18 for 72 hours"]
|
 |
[0.0471, 19.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF027BPY.bed.gz | 1.13 MB | ba16da4685468b8593a685aed7242454 |
| ENCFF027BPY.bed.gz.dvc | 101.0 B | 58fc6766a4ec51e6557ee14c82a02914 |
| ENCFF027BPY.tabix.bed.gz | 1.06 MB | 8c8460e66e948a4d3e58717de090d592 |
| ENCFF027BPY.tabix.bed.gz.dvc | 107.0 B | 65e1d7c1492942d183b93f3311f5e781 |
| ENCFF027BPY.tabix.bed.gz.tbi | 253.79 KB | 039a72af6c06fc7d9ad364479bad74e4 |
| ENCFF027BPY.tabix.bed.gz.tbi.dvc | 110.0 B | e04f076f409224fcc2cf6a99f0221acb |
| genomic_resource.yaml | 3.01 KB | c4c0817bcd11f505c66c532909490e71 |
| genomic_resource_original.yaml | 2.73 KB | 14e86ffe85f5c57a369ba79ab5055e0f |
| statistics/ |