DNase-seq_ENCSR407WGG
DNase-seq ENCSR407WGG [biosample_summary="Homo sapiens natural killer cell female adult (41 years)"]
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| Id: | DNase-seq/ENCSR407WGG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR407WGG [biosample_summary="Homo sapiens natural killer cell female adult (41 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (41 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF144XNA|/files/ENCFF144XNA/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.31. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR407WGG | float |
DNase-seq_ENCSR407WGG |
DNase-seq ENCSR407WGG [biosample_summary="Homo sapiens natural killer cell female adult (41 years)"]
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[0.0651, 25.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF965NLE.bed.gz | 562.94 KB | 5c24f9364fdaa06779bbec65e8030189 |
| ENCFF965NLE.bed.gz.dvc | 100.0 B | d809818207b2b242c7baa2989b16b56f |
| ENCFF965NLE.tabix.bed.gz | 520.81 KB | 2c57d68589b13ddd3cfbe61f1570570c |
| ENCFF965NLE.tabix.bed.gz.dvc | 106.0 B | 1ea0665f3202e337710328f43f307c7f |
| ENCFF965NLE.tabix.bed.gz.tbi | 234.26 KB | 6e68f7bd18781ee15836c1ae3543df00 |
| ENCFF965NLE.tabix.bed.gz.tbi.dvc | 110.0 B | 1a9a4dfcdf3d0c4961629d97143672db |
| genomic_resource.yaml | 2.04 KB | 8b28eee9307ce45e19d6f0918ab68121 |
| genomic_resource_original.yaml | 1.94 KB | 751e7cfe0209b7dfe02b7d69650c02e2 |
| statistics/ |