Resource

Id DNase-seq/ENCSR405YLVcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR405YLV [biosample_summary="Homo sapiens body of pancreas tissue female adult (51 years)"]
Description
Labels
  • accession: ENCSR405YLV
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001150/
  • biosample_summary: Homo sapiens body of pancreas tissue female adult (51 years)
  • date_created: 2019-08-18T16:57:11.948250+00:00
  • date_released: 2019-11-08
  • doi: 10.17989/ENCSR405YLV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (51 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR405YLV float

DNase-seq_ENCSR405YLV

DNase-seq ENCSR405YLV [biosample_summary="Homo sapiens body of pancreas tissue female adult (51 years)"]
HISTOGRAM FOR DNase-seq_ENCSR405YLV [0.0348, 104]
n
26,065,602
mean
3.52
sd
6.15

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 260656020.81% 148024
chr1 2541036 1.02% 14399
chr2 1963912 0.81% 11317
chr3 1502859 0.76% 8638
chr4 1038606 0.55% 6030
chr5 1261034 0.69% 7288
chr6 1354300 0.79% 7819
chr7 1359589 0.85% 7672
chr8 1144894 0.79% 6520
chr9 1191082 0.86% 6697
chr10 1304401 0.97% 7448
chr11 1426825 1.06% 7990
chr12 1176683 0.88% 6699
chr13 555605 0.49% 3227
chr14 915059 0.85% 5179
chr15 894665 0.88% 5118
chr16 1003066 1.11% 5607
chr17 1331393 1.60% 7402
chr18 514619 0.64% 2975
chr19 1147726 1.96% 6266
chr20 771148 1.20% 4355
chr21 317012 0.68% 1788
chr22 658376 1.30% 3634
chrX 691151 0.44% 3951
chrY 561 <0.01% 5
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 148024 5 980 176.09 162
global segment-length histogram

Files

Filename Size md5
ENCFF039OWV.bed.gz 1.62 MB 8a5bc13167932950cce1546f350d2180
ENCFF039OWV.tabix.bed.gz 1.48 MB f7270364d537c6ed4eb2e34a7898903c
ENCFF039OWV.tabix.bed.gz.tbi 490.0 KB 0a8d789048697a37cbb7d12d69b7ce77
genomic_resource.yaml 1.24 KB 126cf9a419d4f4429d747c5f0c153e3a
statistics/