DNase-seq_ENCSR401UZL
DNase-seq ENCSR401UZL [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue male adult (78 years)"]
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| Id: | DNase-seq/ENCSR401UZL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR401UZL [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue male adult (78 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (78 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF301WKE|/files/ENCFF301WKE/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.34. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR401UZL | float |
DNase-seq_ENCSR401UZL |
DNase-seq ENCSR401UZL [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue male adult (78 years)"]
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[0.0603, 14.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF864LVN.bed.gz | 967.58 KB | ea14f8b75dc751fe238618438577353e |
| ENCFF864LVN.bed.gz.dvc | 100.0 B | c810f034ddfd5a351b2e3fcbce7dc021 |
| ENCFF864LVN.tabix.bed.gz | 886.73 KB | bb79a86837b587f931e9df62f27e785c |
| ENCFF864LVN.tabix.bed.gz.dvc | 106.0 B | 56729f1eddab9aa9ca5a72c7e46fb803 |
| ENCFF864LVN.tabix.bed.gz.tbi | 266.66 KB | 43b05d795703ce160819b72a41cf58a9 |
| ENCFF864LVN.tabix.bed.gz.tbi.dvc | 110.0 B | 65d6d7a388c5393e279782bb2586a9c4 |
| genomic_resource.yaml | 2.09 KB | df3f877496fb3336753e98b463d17141 |
| genomic_resource_original.yaml | 1.97 KB | 563ad35ea1a42be9809ba19589668386 |
| statistics/ |