Resource

Id DNase-seq/ENCSR400YJRcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR400YJR [biosample_summary="Homo sapiens naive thymus-derived CD8-positive, alpha-beta T cell"]
Description
Labels
  • accession: ENCSR400YJR
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000900/
  • biosample_summary: Homo sapiens naive thymus-derived CD8-positive, alpha-beta T cell
  • date_created: 2022-02-07T22:20:21.842082+00:00
  • date_released: 2022-02-25
  • doi: 10.17989/ENCSR400YJR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR400YJR float

DNase-seq_ENCSR400YJR
DNase-seq ENCSR400YJR [biosample_summary="Homo sapiens naive thymus-derived CD8-positive, alpha-beta T cell"]
 HISTOGRAM FOR DNase-seq_ENCSR400YJR [0.067, 47.1]
n
16,233,350
mean
3.3
sd
5.12

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 162333500.50% 77789
chr1 1620178 0.65% 7662
chr2 1222983 0.50% 5861
chr3 906020 0.46% 4384
chr4 640775 0.34% 3100
chr5 749349 0.41% 3641
chr6 1000520 0.59% 4690
chr7 782499 0.49% 3773
chr8 612630 0.42% 2977
chr9 644995 0.47% 3134
chr10 732777 0.55% 3512
chr11 811600 0.60% 3876
chr12 839607 0.63% 3981
chr13 381658 0.33% 1774
chr14 565578 0.53% 2724
chr15 515044 0.50% 2551
chr16 598791 0.66% 2894
chr17 937583 1.13% 4432
chr18 278879 0.35% 1335
chr19 856896 1.46% 4047
chr20 421654 0.65% 2061
chr21 207810 0.44% 1006
chr22 358297 0.71% 1746
chrX 546786 0.35% 2625
chrY 441 <0.01% 3
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 77789 2 1060 208.68 200
global segment-length histogram

Files

Filename Size md5
ENCFF524ZRE.bed.gz 865.26 KB b408c68b399bd53caaed3cff6a09694c
ENCFF524ZRE.tabix.bed.gz 802.83 KB 3e27fcd81a8b4c62b30d9448c3df49ac
ENCFF524ZRE.tabix.bed.gz.tbi 310.4 KB 3b137f0bd1903821139b6d284a008fdf
genomic_resource.yaml 1.21 KB afe459d6b15992b362b1c44738007950
statistics/