DNase-seq_ENCSR398JUP
DNase-seq ENCSR398JUP [biosample_summary="Homo sapiens ureter tissue female adult (47 years)"]
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| Id: | DNase-seq/ENCSR398JUP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR398JUP [biosample_summary="Homo sapiens ureter tissue female adult (47 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (47 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF964BCG|/files/ENCFF964BCG/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.31. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR398JUP | float |
DNase-seq_ENCSR398JUP |
DNase-seq ENCSR398JUP [biosample_summary="Homo sapiens ureter tissue female adult (47 years)"]
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[0.0392, 16] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF635FNH.bed.gz | 1.13 MB | 2fba43c7a7e5c154a22b4ee3492d5778 |
| ENCFF635FNH.bed.gz.dvc | 101.0 B | cd5c6b607856bcd2638edfd9ff7af425 |
| ENCFF635FNH.tabix.bed.gz | 1.04 MB | 27f5acb25e088854ddc94a9742dec6a2 |
| ENCFF635FNH.tabix.bed.gz.dvc | 107.0 B | 442ce68a3240de6c55c406b610fc497a |
| ENCFF635FNH.tabix.bed.gz.tbi | 305.03 KB | 8c50fdb3aa45780eefce75a7d2b458f7 |
| ENCFF635FNH.tabix.bed.gz.tbi.dvc | 110.0 B | 95b798238c919794057ab94541e9b9ac |
| genomic_resource.yaml | 2.03 KB | c8ea07011f5f0d545354411872e34cc3 |
| genomic_resource_original.yaml | 1.93 KB | 8cea3531fd33b5a9d04df1bd2a634dc6 |
| statistics/ |