DNase-seq_ENCSR398CXD
DNase-seq ENCSR398CXD [biosample_summary="Homo sapiens CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult (24 years)"]
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| Id: | DNase-seq/ENCSR398CXD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR398CXD [biosample_summary="Homo sapiens CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult (24 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (24 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF560EBB|/files/ENCFF560EBB/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.38. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR398CXD | float |
DNase-seq_ENCSR398CXD |
DNase-seq ENCSR398CXD [biosample_summary="Homo sapiens CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult (24 years)"]
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[0.158, 35.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF213LJI.bed.gz | 327.69 KB | 65709f68d39433e38eccddc886c29d5a |
| ENCFF213LJI.bed.gz.dvc | 100.0 B | 37fb9a3498702c4da76d83caa6d35fc7 |
| ENCFF213LJI.tabix.bed.gz | 297.62 KB | 2e27b4475dfbaaf58a78ebffaa250d59 |
| ENCFF213LJI.tabix.bed.gz.dvc | 106.0 B | ece14150528a64049c699fefa4a4cd47 |
| ENCFF213LJI.tabix.bed.gz.tbi | 161.54 KB | c771eb9062bc0c75ef098b45f3c6ad8e |
| ENCFF213LJI.tabix.bed.gz.tbi.dvc | 110.0 B | 0f0d5e27712f060bc5d5fcf3f2fac406 |
| genomic_resource.yaml | 2.15 KB | b7d3e9a91b4572d87e449304483e53c1 |
| genomic_resource_original.yaml | 2.02 KB | ea16e4a5e0c1d5469c7f807874f3d428 |
| statistics/ |