Resource

Id DNase-seq/ENCSR396ZINcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR396ZIN [biosample_summary="Homo sapiens T-cell female adult (35 years)"]
Description
Labels
  • accession: ENCSR396ZIN
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell female adult (35 years)
  • date_created: 2020-04-12T19:00:05.711829+00:00
  • date_released: 2020-09-25
  • doi: 10.17989/ENCSR396ZIN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (35 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR396ZIN float

DNase-seq_ENCSR396ZIN

DNase-seq ENCSR396ZIN [biosample_summary="Homo sapiens T-cell female adult (35 years)"]
HISTOGRAM FOR DNase-seq_ENCSR396ZIN [0.151, 77.2]
n
9,835,286
mean
6.5
sd
8.5

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 98352860.31% 55033
chr1 984684 0.40% 5509
chr2 683750 0.28% 3849
chr3 531715 0.27% 2981
chr4 343061 0.18% 1919
chr5 433306 0.24% 2422
chr6 574137 0.34% 3206
chr7 455380 0.29% 2545
chr8 363023 0.25% 2072
chr9 392616 0.28% 2206
chr10 436631 0.33% 2461
chr11 502721 0.37% 2845
chr12 500543 0.38% 2779
chr13 200917 0.18% 1123
chr14 341403 0.32% 1896
chr15 319663 0.31% 1801
chr16 409912 0.45% 2297
chr17 608022 0.73% 3374
chr18 157167 0.20% 905
chr19 649478 1.11% 3516
chr20 284584 0.44% 1619
chr21 123279 0.26% 688
chr22 244576 0.48% 1374
chrX 294718 0.19% 1646
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 55033 1 659 178.72 180
global segment-length histogram

Files

Filename Size md5
ENCFF597YKW.bed.gz 615.93 KB 4c63c525e868769b6056754d87b9e28d
ENCFF597YKW.tabix.bed.gz 559.65 KB 951618f88204dd81f3547dcbd838d7f9
ENCFF597YKW.tabix.bed.gz.tbi 251.24 KB 015219e1a7c93a84e097a62eab54b055
genomic_resource.yaml 1.19 KB 0aade6de62267486580eb58bd477a3bb
statistics/