Resource

Id DNase-seq/ENCSR395EZYcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR395EZY [biosample_summary="Homo sapiens placenta tissue male embryo"]
Description
Labels
  • accession: ENCSR395EZY
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001987/
  • biosample_summary: Homo sapiens placenta tissue male embryo
  • date_created: 2019-08-02T16:57:25.806409+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR395EZY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR395EZY float

DNase-seq_ENCSR395EZY

DNase-seq ENCSR395EZY [biosample_summary="Homo sapiens placenta tissue male embryo"]
HISTOGRAM FOR DNase-seq_ENCSR395EZY [0.0237, 89.1]
n
33,780,408
mean
2.91
sd
5.59

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 337804081.05% 183433
chr1 3409708 1.37% 18426
chr2 2322186 0.96% 13010
chr3 1905932 0.96% 10704
chr4 1210832 0.64% 6906
chr5 1507742 0.83% 8520
chr6 1672120 0.98% 9412
chr7 1747577 1.10% 9543
chr8 1350236 0.93% 7429
chr9 1489306 1.08% 8056
chr10 1503240 1.12% 8299
chr11 1990351 1.47% 10491
chr12 1447725 1.09% 8036
chr13 577098 0.50% 3296
chr14 1191655 1.11% 6358
chr15 1035868 1.02% 5652
chr16 1369795 1.52% 7148
chr17 1913523 2.30% 9835
chr18 545345 0.68% 3129
chr19 2019669 3.45% 10093
chr20 1045402 1.62% 5620
chr21 469450 1.01% 2477
chr22 1069365 2.10% 5389
chrX 913351 0.59% 5165
chrY 72932 0.13% 439
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 183433 1 1280 184.16 180
global segment-length histogram

Files

Filename Size md5
ENCFF309GEA.bed.gz 1.98 MB fd5bdabbbf3c3969ca8a28bb3ef21e0c
ENCFF309GEA.tabix.bed.gz 1.82 MB 4cd1f499e0abbfdd7375771ef8fa1823
ENCFF309GEA.tabix.bed.gz.tbi 474.33 KB ebe50f33797e6425e1ddc7a1ef238ebc
genomic_resource.yaml 1.16 KB 3049dfa6c0d6ea14692de5df8ad28453
statistics/