DNase-seq_ENCSR392GCE
DNase-seq ENCSR392GCE [biosample_summary="Homo sapiens heart tissue male embryo (120 days)"]
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| Id: | DNase-seq/ENCSR392GCE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR392GCE [biosample_summary="Homo sapiens heart tissue male embryo (120 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male embryo (120 days) output_type: peaks audit_warning: Alignment file {ENCFF523QHF|/files/ENCFF523QHF/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 40756411 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR392GCE | float |
DNase-seq_ENCSR392GCE |
DNase-seq ENCSR392GCE [biosample_summary="Homo sapiens heart tissue male embryo (120 days)"]
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[0.172, 30.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF104PCD.bed.gz | 963.03 KB | 369eee050ec847497ec52d6486c08ae3 |
| ENCFF104PCD.bed.gz.dvc | 100.0 B | 67364ec18b7f3690ea02f491f2c82ace |
| ENCFF104PCD.tabix.bed.gz | 862.99 KB | 9e3e758698f7d388faec8360ed2e6b20 |
| ENCFF104PCD.tabix.bed.gz.dvc | 106.0 B | 6e92ca5e62fce88528fe85a5dfb45ae8 |
| ENCFF104PCD.tabix.bed.gz.tbi | 431.34 KB | 1e8a886372eada58b70a9da3343ab810 |
| ENCFF104PCD.tabix.bed.gz.tbi.dvc | 110.0 B | 55fb37c183bbc056275d9e98e87d73b8 |
| genomic_resource.yaml | 1.81 KB | 232b88ce6e9862bf928fe408fbe49e66 |
| genomic_resource_original.yaml | 1.72 KB | 2372a46b7a4b40d0747f795b14ce61c5 |
| statistics/ |