DNase-seq_ENCSR391YAV
DNase-seq ENCSR391YAV [biosample_summary="Homo sapiens sigmoid colon tissue male adult (54 years)"]
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| Id: | DNase-seq/ENCSR391YAV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR391YAV [biosample_summary="Homo sapiens sigmoid colon tissue male adult (54 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (54 years) output_type: peaks audit_error: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF332SHA|/files/ENCFF332SHA/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.25. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_internal_action: Archived analysis {ENCAN293WTB|/analyses/ENCAN293WTB/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR391YAV | float |
DNase-seq_ENCSR391YAV |
DNase-seq ENCSR391YAV [biosample_summary="Homo sapiens sigmoid colon tissue male adult (54 years)"]
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[4, 9.29e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF469JHU.bed.gz | 2.66 MB | 343645627cc2d7f823cd6e5b5d5d9053 |
| ENCFF469JHU.bed.gz.dvc | 101.0 B | 9eada69d3436701726f75d91ae222e54 |
| ENCFF469JHU.tabix.bed.gz | 2.3 MB | df200d294a0b1e25738722737ff97c44 |
| ENCFF469JHU.tabix.bed.gz.dvc | 107.0 B | 31f04069cb04ecc4362de9ca28d35234 |
| ENCFF469JHU.tabix.bed.gz.tbi | 380.4 KB | 0566daea8e83d10894f8f21f7d5a3876 |
| ENCFF469JHU.tabix.bed.gz.tbi.dvc | 110.0 B | f93def3e6733b3298124a8969e39ad94 |
| genomic_resource.yaml | 2.19 KB | 9ef0d9895c46ae6e98e54ce851f00c63 |
| genomic_resource_original.yaml | 2.09 KB | 110aa431e0c708d23f3a9931cd74c2d6 |
| statistics/ |