DNase-seq_ENCSR389IHS
DNase-seq ENCSR389IHS [biosample_summary="Homo sapiens T-cell male adult (24 years)"]
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| Id: | DNase-seq/ENCSR389IHS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR389IHS [biosample_summary="Homo sapiens T-cell male adult (24 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (24 years) output_type: peaks audit_warning: Alignment file {ENCFF251CIK|/files/ENCFF251CIK/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 41736008 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF251CIK|/files/ENCFF251CIK/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.32. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR389IHS | float |
DNase-seq_ENCSR389IHS |
DNase-seq ENCSR389IHS [biosample_summary="Homo sapiens T-cell male adult (24 years)"]
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[0.241, 40.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF967SJS.bed.gz | 359.69 KB | fa8f60374128af4b171082f94dabed04 |
| ENCFF967SJS.bed.gz.dvc | 100.0 B | de188eede9e4c598ca4925f750d7ff99 |
| ENCFF967SJS.tabix.bed.gz | 324.93 KB | b9def1cb29bfb39a3709c9a630366768 |
| ENCFF967SJS.tabix.bed.gz.dvc | 106.0 B | fef4db73bc6c83037757d29012306d94 |
| ENCFF967SJS.tabix.bed.gz.tbi | 183.15 KB | 811bd24147b8216c90bb396a264a9d5a |
| ENCFF967SJS.tabix.bed.gz.tbi.dvc | 110.0 B | 506d6186ca0f7acf05c55382b8d440c6 |
| genomic_resource.yaml | 2.62 KB | 81f3504a2d2718aff248b7ec3e9cb806 |
| genomic_resource_original.yaml | 2.53 KB | 25814de8b63fcade5a4a4e79ee36ad3e |
| statistics/ |