DNase-seq_ENCSR389BWT
DNase-seq ENCSR389BWT [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (33 years)"]
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| Id: | DNase-seq/ENCSR389BWT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR389BWT [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (33 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (33 years) output_type: peaks audit_warning: Alignment file {ENCFF502CST|/files/ENCFF502CST/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 33972612 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR389BWT | float |
DNase-seq_ENCSR389BWT |
DNase-seq ENCSR389BWT [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (33 years)"]
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[0.325, 70] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF118AUI.bed.gz | 463.46 KB | eea467dfe788eaeff8e2ccfd5dcf985f |
| ENCFF118AUI.bed.gz.dvc | 100.0 B | 9f79e8132e7ed37fc4b285e441482c20 |
| ENCFF118AUI.tabix.bed.gz | 418.6 KB | 86e3acb88479c59d75bf8b8019a5600c |
| ENCFF118AUI.tabix.bed.gz.dvc | 106.0 B | 37ec34e3e9635d796e5d7124aab54ee3 |
| ENCFF118AUI.tabix.bed.gz.tbi | 219.28 KB | 72dd610b859ba708c2e7a7cf82569434 |
| ENCFF118AUI.tabix.bed.gz.tbi.dvc | 110.0 B | 792751750ae6e77504320f61cf9895d6 |
| genomic_resource.yaml | 1.88 KB | 27c775748358e20f15fb59ea98e63dd0 |
| genomic_resource_original.yaml | 1.77 KB | e47c0ebf649473129320e640420ea395 |
| statistics/ |