Resource

Id DNase-seq/ENCSR389BWTcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR389BWT [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (33 years)"]
Description
Labels
  • accession: ENCSR389BWT
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000624/
  • biosample_summary: Homo sapiens CD4-positive, alpha-beta T cell female adult (33 years)
  • date_created: 2020-04-18T22:21:50.188772+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR389BWT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR389BWT float

DNase-seq_ENCSR389BWT
DNase-seq ENCSR389BWT [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (33 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR389BWT [0.325, 70]
n
7,470,759
mean
7.59
sd
8.54

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 74707590.23% 41798
chr1 755859 0.30% 4231
chr2 525060 0.22% 2959
chr3 405266 0.20% 2290
chr4 254403 0.13% 1427
chr5 326457 0.18% 1846
chr6 431662 0.25% 2412
chr7 345189 0.22% 1937
chr8 270842 0.19% 1542
chr9 294217 0.21% 1665
chr10 328614 0.25% 1852
chr11 387521 0.29% 2158
chr12 377479 0.28% 2108
chr13 155996 0.14% 860
chr14 267103 0.25% 1489
chr15 243728 0.24% 1386
chr16 311795 0.35% 1736
chr17 462638 0.56% 2576
chr18 112878 0.14% 638
chr19 502726 0.86% 2710
chr20 206281 0.32% 1159
chr21 92926 0.20% 510
chr22 182192 0.36% 1025
chrX 229927 0.15% 1282
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 41798 3 920 178.73 180
global segment-length histogram

Files

Filename Size md5
ENCFF118AUI.bed.gz 463.46 KB eea467dfe788eaeff8e2ccfd5dcf985f
ENCFF118AUI.tabix.bed.gz 418.6 KB 86e3acb88479c59d75bf8b8019a5600c
ENCFF118AUI.tabix.bed.gz.tbi 219.28 KB 72dd610b859ba708c2e7a7cf82569434
genomic_resource.yaml 1.88 KB 27c775748358e20f15fb59ea98e63dd0
statistics/