Resource

Id DNase-seq/ENCSR388NOIcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR388NOI [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (39 years) treated with Interleukin-17A for 1 hour"]
Description
Labels
  • accession: ENCSR388NOI
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000624/
  • biosample_summary: Homo sapiens CD4-positive, alpha-beta T cell female adult (39 years) treated with Interleukin-17A for 1 hour
  • date_created: 2018-11-30T18:43:54.416030+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR388NOI
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (39 years) treated with Interleukin-17A for 1 hour
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR388NOI float

DNase-seq_ENCSR388NOI
DNase-seq ENCSR388NOI [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (39 years) treated with Interleukin-17A for 1 hour"]
 HISTOGRAM FOR DNase-seq_ENCSR388NOI [0.0221, 102]
n
19,464,585
mean
4.43
sd
9.21

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 194645850.60% 96251
chr1 1969891 0.79% 9658
chr2 1452303 0.60% 7163
chr3 1092966 0.55% 5457
chr4 717399 0.38% 3625
chr5 916324 0.50% 4558
chr6 1217739 0.71% 5943
chr7 926174 0.58% 4620
chr8 754328 0.52% 3798
chr9 774265 0.56% 3859
chr10 892759 0.67% 4415
chr11 999660 0.74% 4918
chr12 983336 0.74% 4889
chr13 433858 0.38% 2158
chr14 724827 0.68% 3562
chr15 614775 0.60% 3080
chr16 696240 0.77% 3424
chr17 1055079 1.27% 5161
chr18 333622 0.42% 1688
chr19 1083507 1.85% 5160
chr20 523033 0.81% 2624
chr21 238281 0.51% 1188
chr22 428768 0.84% 2132
chrX 605732 0.39% 3014
chrY 29719 0.05% 157
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 96251 2 1080 202.23 200
global segment-length histogram

Files

Filename Size md5
ENCFF789TLJ.bed.gz 1.06 MB 5d41d8f9e6a9c45d639404cbe7c700da
ENCFF789TLJ.tabix.bed.gz 995.43 KB 094b6948a20eb98eadcd33b8a46308b4
ENCFF789TLJ.tabix.bed.gz.tbi 352.46 KB 66a4ccf57b5749bdc3d1c013196f9bb4
genomic_resource.yaml 1.47 KB eaa8d70de598c0b7fd819afb97b320df
statistics/