Resource

Id DNase-seq/ENCSR387EYAcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR387EYA [biosample_summary="Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell male adult (43 years)"]
Description
Labels
  • accession: ENCSR387EYA
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000895/
  • biosample_summary: Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell male adult (43 years)
  • date_created: 2019-08-24T00:09:40.673548+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR387EYA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (43 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR387EYA float

DNase-seq_ENCSR387EYA
DNase-seq ENCSR387EYA [biosample_summary="Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell male adult (43 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR387EYA [0.049, 82.1]
n
12,335,847
mean
5.08
sd
8.1

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 123358470.38% 64879
chr1 1262931 0.51% 6606
chr2 875500 0.36% 4637
chr3 640456 0.32% 3411
chr4 427711 0.22% 2254
chr5 544194 0.30% 2841
chr6 716157 0.42% 3719
chr7 557373 0.35% 2959
chr8 461788 0.32% 2461
chr9 481139 0.35% 2552
chr10 557618 0.42% 2924
chr11 657120 0.49% 3460
chr12 621412 0.47% 3298
chr13 244550 0.21% 1269
chr14 460910 0.43% 2396
chr15 369662 0.36% 1979
chr16 501995 0.56% 2606
chr17 773188 0.93% 4034
chr18 184276 0.23% 956
chr19 779168 1.33% 4007
chr20 352148 0.55% 1888
chr21 176163 0.38% 959
chr22 307474 0.61% 1663
chrX 366057 0.23% 1907
chrY 16857 0.03% 93
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 64879 5 820 190.14 180
global segment-length histogram

Files

Filename Size md5
ENCFF928IGF.bed.gz 731.98 KB bf9c9e9382443259613da1a8db2ccb7a
ENCFF928IGF.tabix.bed.gz 670.2 KB b2bc0944fbe21312e4c6d88b1c907879
ENCFF928IGF.tabix.bed.gz.tbi 240.28 KB 5de6edb5876afc318cb7d293a86867b9
genomic_resource.yaml 1.32 KB f9dbf473cd764dd219e4762142fc1bff
statistics/